Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06745

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06730 and BWI76_RS06735 are separated by 111 nucleotidesBWI76_RS06735 and BWI76_RS06740 overlap by 1 nucleotidesBWI76_RS06740 and BWI76_RS06745 overlap by 4 nucleotidesBWI76_RS06745 and BWI76_RS06750 are separated by 100 nucleotides BWI76_RS06730: BWI76_RS06730 - lac repressor, at 1,412,617 to 1,413,690 _RS06730 BWI76_RS06735: BWI76_RS06735 - 50S ribosomal protein L31, at 1,413,802 to 1,414,065 _RS06735 BWI76_RS06740: BWI76_RS06740 - 50S ribosomal protein L36, at 1,414,065 to 1,414,205 _RS06740 BWI76_RS06745: BWI76_RS06745 - N-acetyltransferase GCN5, at 1,414,202 to 1,414,900 _RS06745 BWI76_RS06750: BWI76_RS06750 - GntR family transcriptional regulator with, at 1,415,001 to 1,416,455 _RS06750 Position (kb) 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1at 1413.248 kb on + strand, within BWI76_RS06730at 1413.536 kb on - strand, within BWI76_RS06730at 1413.592 kb on + strandat 1413.622 kb on + strandat 1413.657 kb on + strandat 1413.657 kb on + strandat 1413.665 kb on - strandat 1413.907 kb on + strand, within BWI76_RS06735at 1414.080 kb on + strand, within BWI76_RS06740at 1414.090 kb on + strand, within BWI76_RS06740at 1414.169 kb on + strand, within BWI76_RS06740at 1414.533 kb on + strand, within BWI76_RS06745at 1414.656 kb on + strand, within BWI76_RS06745at 1414.752 kb on + strandat 1414.762 kb on + strand, within BWI76_RS06745at 1414.893 kb on - strandat 1414.903 kb on - strandat 1415.175 kb on - strand, within BWI76_RS06750at 1415.187 kb on + strand, within BWI76_RS06750at 1415.187 kb on + strand, within BWI76_RS06750at 1415.247 kb on + strand, within BWI76_RS06750at 1415.264 kb on + strand, within BWI76_RS06750at 1415.374 kb on - strand, within BWI76_RS06750at 1415.424 kb on - strand, within BWI76_RS06750at 1415.536 kb on - strand, within BWI76_RS06750at 1415.548 kb on + strand, within BWI76_RS06750at 1415.604 kb on + strand, within BWI76_RS06750at 1415.612 kb on - strand, within BWI76_RS06750at 1415.737 kb on + strand, within BWI76_RS06750at 1415.802 kb on + strand, within BWI76_RS06750at 1415.877 kb on + strand, within BWI76_RS06750at 1415.885 kb on - strand, within BWI76_RS06750

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,413,248 + BWI76_RS06730 0.59 -2.5
1,413,536 - BWI76_RS06730 0.86 +0.9
1,413,592 + +0.8
1,413,622 + +0.5
1,413,657 + +0.4
1,413,657 + +0.6
1,413,665 - -3.5
1,413,907 + BWI76_RS06735 0.40 -2.2
1,414,080 + BWI76_RS06740 0.11 -0.4
1,414,090 + BWI76_RS06740 0.18 -0.7
1,414,169 + BWI76_RS06740 0.74 +0.1
1,414,533 + BWI76_RS06745 0.47 -0.2
1,414,656 + BWI76_RS06745 0.65 -3.4
1,414,752 + -0.7
1,414,762 + BWI76_RS06745 0.80 -3.6
1,414,893 - -0.2
1,414,903 - +0.9
1,415,175 - BWI76_RS06750 0.12 -0.0
1,415,187 + BWI76_RS06750 0.13 -0.5
1,415,187 + BWI76_RS06750 0.13 +0.3
1,415,247 + BWI76_RS06750 0.17 +0.0
1,415,264 + BWI76_RS06750 0.18 +0.6
1,415,374 - BWI76_RS06750 0.26 -0.4
1,415,424 - BWI76_RS06750 0.29 -0.7
1,415,536 - BWI76_RS06750 0.37 -1.3
1,415,548 + BWI76_RS06750 0.38 -0.4
1,415,604 + BWI76_RS06750 0.41 -0.0
1,415,612 - BWI76_RS06750 0.42 -0.2
1,415,737 + BWI76_RS06750 0.51 +0.2
1,415,802 + BWI76_RS06750 0.55 +0.0
1,415,877 + BWI76_RS06750 0.60 -0.7
1,415,885 - BWI76_RS06750 0.61 +0.7

Or see this region's nucleotide sequence