Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04875

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04870 and BWI76_RS04875 are separated by 655 nucleotidesBWI76_RS04875 and BWI76_RS04880 are separated by 119 nucleotides BWI76_RS04870: BWI76_RS04870 - aromatic amino acid transporter AroP, at 1,017,084 to 1,018,451 _RS04870 BWI76_RS04875: BWI76_RS04875 - transcriptional regulator PdhR, at 1,019,107 to 1,019,886 _RS04875 BWI76_RS04880: BWI76_RS04880 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 1,020,006 to 1,022,669 _RS04880 Position (kb) 1019 1020Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1018.528 kb on - strandat 1018.528 kb on - strandat 1018.962 kb on + strandat 1019.425 kb on + strand, within BWI76_RS04875at 1019.425 kb on + strand, within BWI76_RS04875at 1019.433 kb on - strand, within BWI76_RS04875at 1019.621 kb on + strand, within BWI76_RS04875at 1019.818 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,018,528 - +0.0
1,018,528 - -2.8
1,018,962 + +2.0
1,019,425 + BWI76_RS04875 0.41 -1.8
1,019,425 + BWI76_RS04875 0.41 -1.2
1,019,433 - BWI76_RS04875 0.42 -0.3
1,019,621 + BWI76_RS04875 0.66 -0.5
1,019,818 + -0.3

Or see this region's nucleotide sequence