Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00180

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00175 and BWI76_RS00180 are separated by 417 nucleotidesBWI76_RS00180 and BWI76_RS00185 are separated by 20 nucleotides BWI76_RS00175: BWI76_RS00175 - pectate disaccharide-lyase, at 35,856 to 38,027 _RS00175 BWI76_RS00180: BWI76_RS00180 - F0F1 ATP synthase subunit epsilon, at 38,445 to 38,864 _RS00180 BWI76_RS00185: BWI76_RS00185 - ATP synthase subunit beta, at 38,885 to 40,267 _RS00185 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1at 37.527 kb on - strand, within BWI76_RS00175at 37.639 kb on + strand, within BWI76_RS00175at 37.816 kb on + strandat 37.816 kb on + strandat 38.001 kb on - strandat 38.550 kb on - strand, within BWI76_RS00180at 38.550 kb on - strand, within BWI76_RS00180

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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37,527 - BWI76_RS00175 0.77 -2.4
37,639 + BWI76_RS00175 0.82 -1.2
37,816 + +0.0
37,816 + -0.6
38,001 - -0.4
38,550 - BWI76_RS00180 0.25 -1.8
38,550 - BWI76_RS00180 0.25 -2.1

Or see this region's nucleotide sequence