Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19300 and BWI76_RS19305 are separated by 10 nucleotides BWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotides BWI76_RS19310 and BWI76_RS19315 overlap by 4 nucleotides
BWI76_RS19300: BWI76_RS19300 - ABC transporter ATP-binding protein, at 4,020,682 to 4,021,455
_RS19300
BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329
_RS19305
BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206
_RS19310
BWI76_RS19315: BWI76_RS19315 - ABC transporter permease, at 4,023,203 to 4,024,240
_RS19315
Position (kb) 4022
4023
4024 Strain fitness (log2 ratio) -2
-1
0
1 at 4021.917 kb on + strand, within BWI76_RS19305 at 4021.948 kb on + strand, within BWI76_RS19305 at 4022.054 kb on + strand, within BWI76_RS19305 at 4022.157 kb on + strand, within BWI76_RS19305 at 4022.241 kb on - strand, within BWI76_RS19305 at 4022.298 kb on + strand at 4022.546 kb on - strand, within BWI76_RS19310 at 4022.644 kb on - strand, within BWI76_RS19310 at 4023.369 kb on + strand, within BWI76_RS19315 at 4023.410 kb on - strand, within BWI76_RS19315 at 4023.486 kb on + strand, within BWI76_RS19315 at 4023.579 kb on - strand, within BWI76_RS19315 at 4023.784 kb on + strand, within BWI76_RS19315 at 4023.872 kb on + strand, within BWI76_RS19315 at 4024.108 kb on - strand, within BWI76_RS19315 at 4024.165 kb on + strand at 4024.165 kb on + strand at 4024.165 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 4,021,917 + BWI76_RS19305 0.52 -0.9 4,021,948 + BWI76_RS19305 0.56 -0.2 4,022,054 + BWI76_RS19305 0.68 -0.4 4,022,157 + BWI76_RS19305 0.80 +0.8 4,022,241 - BWI76_RS19305 0.90 -0.6 4,022,298 + -1.1 4,022,546 - BWI76_RS19310 0.27 -1.2 4,022,644 - BWI76_RS19310 0.38 -0.7 4,023,369 + BWI76_RS19315 0.16 -0.5 4,023,410 - BWI76_RS19315 0.20 -0.1 4,023,486 + BWI76_RS19315 0.27 -0.3 4,023,579 - BWI76_RS19315 0.36 -0.6 4,023,784 + BWI76_RS19315 0.56 -1.8 4,023,872 + BWI76_RS19315 0.64 +0.9 4,024,108 - BWI76_RS19315 0.87 -0.4 4,024,165 + -0.1 4,024,165 + -0.5 4,024,165 + +1.4
Or see this region's nucleotide sequence