Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16085 and BWI76_RS16090 overlap by 4 nucleotides BWI76_RS16090 and BWI76_RS16095 overlap by 20 nucleotides BWI76_RS16095 and BWI76_RS16100 are separated by 67 nucleotides
BWI76_RS16085: BWI76_RS16085 - two-component system sensor histidine kinase DcuS, at 3,335,222 to 3,336,841
_RS16085
BWI76_RS16090: BWI76_RS16090 - two-component system response regulator DcuR, at 3,336,838 to 3,337,557
_RS16090
BWI76_RS16095: BWI76_RS16095 - thiamine biosynthesis protein ApbE, at 3,337,538 to 3,338,488
_RS16095
BWI76_RS16100: BWI76_RS16100 - flavocytochrome c, at 3,338,556 to 3,341,333
_RS16100
Position (kb)
3336
3337
3338 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3335.919 kb on + strand, within BWI76_RS16085 at 3335.981 kb on - strand, within BWI76_RS16085 at 3336.249 kb on - strand, within BWI76_RS16085 at 3336.323 kb on - strand, within BWI76_RS16085 at 3336.444 kb on + strand, within BWI76_RS16085 at 3336.452 kb on - strand, within BWI76_RS16085 at 3336.568 kb on + strand, within BWI76_RS16085 at 3336.650 kb on + strand, within BWI76_RS16085 at 3336.822 kb on + strand at 3337.028 kb on - strand, within BWI76_RS16090 at 3337.119 kb on - strand, within BWI76_RS16090 at 3337.143 kb on - strand, within BWI76_RS16090 at 3337.825 kb on + strand, within BWI76_RS16095 at 3338.170 kb on + strand, within BWI76_RS16095 at 3338.331 kb on + strand, within BWI76_RS16095 at 3338.426 kb on - strand at 3338.468 kb on - strand at 3338.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 3,335,919 + BWI76_RS16085 0.43 -0.5 3,335,981 - BWI76_RS16085 0.47 -0.2 3,336,249 - BWI76_RS16085 0.63 -0.1 3,336,323 - BWI76_RS16085 0.68 +0.1 3,336,444 + BWI76_RS16085 0.75 -0.1 3,336,452 - BWI76_RS16085 0.76 +0.2 3,336,568 + BWI76_RS16085 0.83 +1.8 3,336,650 + BWI76_RS16085 0.88 +1.3 3,336,822 + +0.3 3,337,028 - BWI76_RS16090 0.26 +3.3 3,337,119 - BWI76_RS16090 0.39 +1.2 3,337,143 - BWI76_RS16090 0.42 +0.8 3,337,825 + BWI76_RS16095 0.30 -0.1 3,338,170 + BWI76_RS16095 0.66 -0.3 3,338,331 + BWI76_RS16095 0.83 -0.6 3,338,426 - +1.2 3,338,468 - +0.9 3,338,505 - -0.5
Or see this region's nucleotide sequence