Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07455 and BWI76_RS07460 are separated by 118 nucleotides BWI76_RS07460 and BWI76_RS07465 overlap by 1 nucleotides BWI76_RS07465 and BWI76_RS07470 are separated by 190 nucleotides
BWI76_RS07455: BWI76_RS07455 - NAD(P)H nitroreductase, at 1,573,790 to 1,574,443
_RS07455
BWI76_RS07460: BWI76_RS07460 - hypothetical protein, at 1,574,562 to 1,574,930
_RS07460
BWI76_RS07465: BWI76_RS07465 - TetR family transcriptional regulator, at 1,574,930 to 1,575,511
_RS07465
BWI76_RS07470: BWI76_RS07470 - MBL fold metallo-hydrolase, at 1,575,702 to 1,576,802
_RS07470
Position (kb)
1574
1575
1576 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1574.160 kb on + strand, within BWI76_RS07455 at 1574.165 kb on + strand, within BWI76_RS07455 at 1574.465 kb on - strand at 1574.702 kb on + strand, within BWI76_RS07460 at 1574.900 kb on + strand at 1574.947 kb on - strand at 1575.250 kb on - strand, within BWI76_RS07465 at 1575.306 kb on + strand, within BWI76_RS07465 at 1575.514 kb on - strand at 1575.575 kb on - strand at 1575.835 kb on - strand, within BWI76_RS07470 at 1575.968 kb on + strand, within BWI76_RS07470 at 1576.364 kb on + strand, within BWI76_RS07470
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 1,574,160 + BWI76_RS07455 0.57 -0.3 1,574,165 + BWI76_RS07455 0.57 +4.0 1,574,465 - -0.3 1,574,702 + BWI76_RS07460 0.38 -0.2 1,574,900 + +1.7 1,574,947 - +0.9 1,575,250 - BWI76_RS07465 0.55 -1.1 1,575,306 + BWI76_RS07465 0.65 -0.7 1,575,514 - -0.6 1,575,575 - +0.1 1,575,835 - BWI76_RS07470 0.12 -0.7 1,575,968 + BWI76_RS07470 0.24 -0.8 1,576,364 + BWI76_RS07470 0.60 +0.3
Or see this region's nucleotide sequence