Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17650 and BWI76_RS17655 are separated by 103 nucleotides BWI76_RS17655 and BWI76_RS17660 are separated by 94 nucleotides BWI76_RS17660 and BWI76_RS17665 overlap by 16 nucleotides
BWI76_RS17650: BWI76_RS17650 - putative fatty acid desaturase, at 3,666,416 to 3,667,399
_RS17650
BWI76_RS17655: BWI76_RS17655 - MFS transporter, at 3,667,503 to 3,668,642
_RS17655
BWI76_RS17660: BWI76_RS17660 - AraC/XylS familytranscription regulator, at 3,668,737 to 3,669,504
_RS17660
BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241
_RS17665
Position (kb)
3667
3668
3669 Strain fitness (log2 ratio)
-2
-1
0
1 at 3666.654 kb on - strand, within BWI76_RS17650 at 3666.656 kb on + strand, within BWI76_RS17650 at 3666.659 kb on - strand, within BWI76_RS17650 at 3666.686 kb on + strand, within BWI76_RS17650 at 3667.080 kb on + strand, within BWI76_RS17650 at 3667.188 kb on + strand, within BWI76_RS17650 at 3667.189 kb on + strand, within BWI76_RS17650 at 3667.508 kb on - strand at 3668.127 kb on - strand, within BWI76_RS17655 at 3668.136 kb on + strand, within BWI76_RS17655 at 3668.221 kb on + strand, within BWI76_RS17655 at 3668.281 kb on - strand, within BWI76_RS17655 at 3668.469 kb on + strand, within BWI76_RS17655 at 3668.671 kb on + strand at 3668.946 kb on - strand at 3669.018 kb on + strand, within BWI76_RS17660 at 3669.057 kb on - strand, within BWI76_RS17660
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 3,666,654 - BWI76_RS17650 0.24 +0.3 3,666,656 + BWI76_RS17650 0.24 -1.7 3,666,659 - BWI76_RS17650 0.25 -0.2 3,666,686 + BWI76_RS17650 0.27 -0.1 3,667,080 + BWI76_RS17650 0.67 -0.9 3,667,188 + BWI76_RS17650 0.78 +0.4 3,667,189 + BWI76_RS17650 0.79 -0.5 3,667,508 - -0.5 3,668,127 - BWI76_RS17655 0.55 +1.1 3,668,136 + BWI76_RS17655 0.56 -2.1 3,668,221 + BWI76_RS17655 0.63 -2.1 3,668,281 - BWI76_RS17655 0.68 -2.0 3,668,469 + BWI76_RS17655 0.85 -1.2 3,668,671 + +0.7 3,668,946 - +0.2 3,669,018 + BWI76_RS17660 0.37 -0.0 3,669,057 - BWI76_RS17660 0.42 -0.3
Or see this region's nucleotide sequence