Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14510 and BWI76_RS14515 overlap by 8 nucleotides BWI76_RS14515 and BWI76_RS14520 overlap by 14 nucleotides
BWI76_RS14510: BWI76_RS14510 - MFS transporter, at 3,029,846 to 3,031,126
_RS14510
BWI76_RS14515: BWI76_RS14515 - yersiniabactin-iron ABC transporter permease ATP-binding protein YbtQ, at 3,031,119 to 3,032,921
_RS14515
BWI76_RS14520: BWI76_RS14520 - hypothetical protein, at 3,032,908 to 3,034,710
_RS14520
Position (kb)
3031
3032
3033 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3030.343 kb on - strand, within BWI76_RS14510 at 3030.519 kb on + strand, within BWI76_RS14510 at 3030.530 kb on + strand, within BWI76_RS14510 at 3030.653 kb on + strand, within BWI76_RS14510 at 3030.661 kb on - strand, within BWI76_RS14510 at 3030.934 kb on - strand, within BWI76_RS14510 at 3031.050 kb on - strand at 3031.217 kb on - strand at 3031.242 kb on - strand at 3031.512 kb on + strand, within BWI76_RS14515 at 3031.573 kb on - strand, within BWI76_RS14515 at 3032.035 kb on + strand, within BWI76_RS14515 at 3032.187 kb on + strand, within BWI76_RS14515 at 3032.386 kb on + strand, within BWI76_RS14515 at 3032.660 kb on + strand, within BWI76_RS14515 at 3032.668 kb on - strand, within BWI76_RS14515 at 3032.713 kb on + strand, within BWI76_RS14515 at 3032.836 kb on + strand at 3032.906 kb on + strand at 3032.938 kb on - strand at 3033.117 kb on - strand, within BWI76_RS14520 at 3033.497 kb on - strand, within BWI76_RS14520
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 3,030,343 - BWI76_RS14510 0.39 +0.2 3,030,519 + BWI76_RS14510 0.53 -0.4 3,030,530 + BWI76_RS14510 0.53 -0.8 3,030,653 + BWI76_RS14510 0.63 -0.3 3,030,661 - BWI76_RS14510 0.64 -0.4 3,030,934 - BWI76_RS14510 0.85 -1.3 3,031,050 - -1.0 3,031,217 - -0.2 3,031,242 - +0.9 3,031,512 + BWI76_RS14515 0.22 -0.9 3,031,573 - BWI76_RS14515 0.25 -1.5 3,032,035 + BWI76_RS14515 0.51 -3.8 3,032,187 + BWI76_RS14515 0.59 -2.7 3,032,386 + BWI76_RS14515 0.70 +0.0 3,032,660 + BWI76_RS14515 0.85 -0.3 3,032,668 - BWI76_RS14515 0.86 -0.9 3,032,713 + BWI76_RS14515 0.88 -0.4 3,032,836 + -1.7 3,032,906 + -0.9 3,032,938 - -2.6 3,033,117 - BWI76_RS14520 0.12 -1.2 3,033,497 - BWI76_RS14520 0.33 +0.1
Or see this region's nucleotide sequence