Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11780 and BWI76_RS11785 are separated by 130 nucleotides BWI76_RS11785 and BWI76_RS11790 are separated by 32 nucleotides BWI76_RS11790 and BWI76_RS11795 are separated by 99 nucleotides
BWI76_RS11780: BWI76_RS11780 - 2-deoxyglucose-6-phosphatase, at 2,478,445 to 2,479,113
_RS11780
BWI76_RS11785: BWI76_RS11785 - hypothetical protein, at 2,479,244 to 2,479,780
_RS11785
BWI76_RS11790: BWI76_RS11790 - acyl-CoA thioesterase, at 2,479,813 to 2,480,211
_RS11790
BWI76_RS11795: BWI76_RS11795 - TonB-dependent siderophore receptor, at 2,480,311 to 2,482,491
_RS11795
Position (kb)
2479
2480
2481 Strain fitness (log2 ratio)
-2
-1
0
1 at 2478.926 kb on + strand, within BWI76_RS11780 at 2479.249 kb on - strand at 2479.249 kb on - strand at 2479.401 kb on + strand, within BWI76_RS11785 at 2480.138 kb on + strand, within BWI76_RS11790 at 2480.574 kb on - strand, within BWI76_RS11795 at 2480.610 kb on + strand, within BWI76_RS11795 at 2480.618 kb on - strand, within BWI76_RS11795 at 2481.066 kb on - strand, within BWI76_RS11795 at 2481.106 kb on + strand, within BWI76_RS11795 at 2481.114 kb on - strand, within BWI76_RS11795
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 2,478,926 + BWI76_RS11780 0.72 -1.8 2,479,249 - +0.3 2,479,249 - -0.2 2,479,401 + BWI76_RS11785 0.29 +0.1 2,480,138 + BWI76_RS11790 0.81 -1.2 2,480,574 - BWI76_RS11795 0.12 +0.3 2,480,610 + BWI76_RS11795 0.14 -1.7 2,480,618 - BWI76_RS11795 0.14 +0.5 2,481,066 - BWI76_RS11795 0.35 +0.6 2,481,106 + BWI76_RS11795 0.36 -1.2 2,481,114 - BWI76_RS11795 0.37 +0.4
Or see this region's nucleotide sequence