Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11225

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11220 and BWI76_RS11225 are separated by 48 nucleotidesBWI76_RS11225 and BWI76_RS11230 are separated by 14 nucleotidesBWI76_RS11230 and BWI76_RS11235 are separated by 28 nucleotides BWI76_RS11220: BWI76_RS11220 - lipoprotein transporter subunit LolE, at 2,367,462 to 2,368,706 _RS11220 BWI76_RS11225: BWI76_RS11225 - N-acetylglucosamine kinase, at 2,368,755 to 2,369,666 _RS11225 BWI76_RS11230: BWI76_RS11230 - NAD-dependent deacylase, at 2,369,681 to 2,370,526 _RS11230 BWI76_RS11235: BWI76_RS11235 - hypothetical protein, at 2,370,555 to 2,370,860 _RS11235 Position (kb) 2368 2369 2370Strain fitness (log2 ratio) -2 -1 0 1at 2368.804 kb on - strandat 2369.610 kb on + strandat 2369.628 kb on + strandat 2369.636 kb on - strandat 2369.735 kb on + strandat 2369.988 kb on - strand, within BWI76_RS11230at 2370.211 kb on - strand, within BWI76_RS11230at 2370.335 kb on - strand, within BWI76_RS11230at 2370.442 kb on + strandat 2370.552 kb on + strandat 2370.560 kb on - strandat 2370.623 kb on + strand, within BWI76_RS11235

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
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2,368,804 - -0.8
2,369,610 + +0.2
2,369,628 + -0.2
2,369,636 - -0.7
2,369,735 + +0.1
2,369,988 - BWI76_RS11230 0.36 -0.0
2,370,211 - BWI76_RS11230 0.63 -0.3
2,370,335 - BWI76_RS11230 0.77 -0.3
2,370,442 + +0.2
2,370,552 + -0.4
2,370,560 - -0.3
2,370,623 + BWI76_RS11235 0.22 -2.0

Or see this region's nucleotide sequence