Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10560 and BWI76_RS10565 are separated by 168 nucleotides BWI76_RS10565 and BWI76_RS10570 are separated by 214 nucleotides
BWI76_RS10560: BWI76_RS10560 - gamma-glutamyltransferase, at 2,230,064 to 2,231,647
_RS10560
BWI76_RS10565: BWI76_RS10565 - sugar isomerase, at 2,231,816 to 2,232,655
_RS10565
BWI76_RS10570: BWI76_RS10570 - cysteine ABC transporter substrate-binding protein, at 2,232,870 to 2,233,655
_RS10570
Position (kb)
2231
2232
2233 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2230.907 kb on - strand, within BWI76_RS10560 at 2230.999 kb on + strand, within BWI76_RS10560 at 2231.062 kb on + strand, within BWI76_RS10560 at 2231.079 kb on + strand, within BWI76_RS10560 at 2231.594 kb on + strand at 2231.926 kb on - strand, within BWI76_RS10565 at 2232.085 kb on - strand, within BWI76_RS10565 at 2232.153 kb on + strand, within BWI76_RS10565 at 2232.155 kb on - strand, within BWI76_RS10565 at 2232.228 kb on - strand, within BWI76_RS10565 at 2232.320 kb on + strand, within BWI76_RS10565 at 2232.893 kb on + strand at 2232.893 kb on + strand at 2233.032 kb on - strand, within BWI76_RS10570 at 2233.157 kb on - strand, within BWI76_RS10570 at 2233.221 kb on - strand, within BWI76_RS10570 at 2233.384 kb on - strand, within BWI76_RS10570
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 2,230,907 - BWI76_RS10560 0.53 +0.4 2,230,999 + BWI76_RS10560 0.59 -0.8 2,231,062 + BWI76_RS10560 0.63 +0.0 2,231,079 + BWI76_RS10560 0.64 +0.7 2,231,594 + -0.1 2,231,926 - BWI76_RS10565 0.13 -0.8 2,232,085 - BWI76_RS10565 0.32 -0.3 2,232,153 + BWI76_RS10565 0.40 -3.2 2,232,155 - BWI76_RS10565 0.40 -0.3 2,232,228 - BWI76_RS10565 0.49 -0.1 2,232,320 + BWI76_RS10565 0.60 -2.6 2,232,893 + -0.8 2,232,893 + -2.8 2,233,032 - BWI76_RS10570 0.21 -0.2 2,233,157 - BWI76_RS10570 0.37 +0.1 2,233,221 - BWI76_RS10570 0.45 +1.5 2,233,384 - BWI76_RS10570 0.65 +0.1
Or see this region's nucleotide sequence