Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04885 and BWI76_RS04890 are separated by 207 nucleotides BWI76_RS04890 and BWI76_RS04895 are separated by 162 nucleotides BWI76_RS04895 and BWI76_RS04900 are separated by 50 nucleotides
BWI76_RS04885: BWI76_RS04885 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 1,022,684 to 1,024,573
_RS04885
BWI76_RS04890: BWI76_RS04890 - dihydrolipoyl dehydrogenase, at 1,024,781 to 1,026,205
_RS04890
BWI76_RS04895: BWI76_RS04895 - hypothetical protein, at 1,026,368 to 1,026,652
_RS04895
BWI76_RS04900: BWI76_RS04900 - DUF2950 domain-containing protein, at 1,026,703 to 1,027,497
_RS04900
Position (kb) 1024
1025
1026
1027 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1026.265 kb on + strand at 1026.273 kb on - strand at 1026.273 kb on - strand at 1026.384 kb on - strand at 1026.400 kb on - strand, within BWI76_RS04895 at 1026.416 kb on + strand, within BWI76_RS04895 at 1026.424 kb on - strand, within BWI76_RS04895 at 1026.944 kb on - strand, within BWI76_RS04900
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 1,026,265 + +0.3 1,026,273 - +2.3 1,026,273 - -1.0 1,026,384 - +1.8 1,026,400 - BWI76_RS04895 0.11 -3.6 1,026,416 + BWI76_RS04895 0.17 +2.0 1,026,424 - BWI76_RS04895 0.20 +0.6 1,026,944 - BWI76_RS04900 0.30 -0.2
Or see this region's nucleotide sequence