Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26225 and BWI76_RS26230 overlap by 4 nucleotides BWI76_RS26230 and BWI76_RS26235 are separated by 144 nucleotides
BWI76_RS26225: BWI76_RS26225 - DNA processing protein DprA, at 5,428,136 to 5,429,341
_RS26225
BWI76_RS26230: BWI76_RS26230 - ATP-dependent DNA helicase, at 5,429,338 to 5,431,437
_RS26230
BWI76_RS26235: BWI76_RS26235 - gluconate transporter, at 5,431,582 to 5,432,922
_RS26235
Position (kb) 5429
5430
5431
5432 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5428.388 kb on + strand, within BWI76_RS26225 at 5428.407 kb on + strand, within BWI76_RS26225 at 5428.530 kb on - strand, within BWI76_RS26225 at 5428.569 kb on - strand, within BWI76_RS26225 at 5428.714 kb on - strand, within BWI76_RS26225 at 5428.822 kb on + strand, within BWI76_RS26225 at 5428.822 kb on + strand, within BWI76_RS26225 at 5428.944 kb on - strand, within BWI76_RS26225 at 5429.056 kb on + strand, within BWI76_RS26225 at 5429.056 kb on + strand, within BWI76_RS26225 at 5429.062 kb on + strand, within BWI76_RS26225 at 5429.098 kb on + strand, within BWI76_RS26225 at 5429.179 kb on + strand, within BWI76_RS26225 at 5429.276 kb on + strand at 5429.284 kb on - strand at 5429.479 kb on - strand at 5429.644 kb on - strand, within BWI76_RS26230 at 5430.001 kb on - strand, within BWI76_RS26230 at 5430.017 kb on + strand, within BWI76_RS26230 at 5430.031 kb on - strand, within BWI76_RS26230 at 5430.063 kb on + strand, within BWI76_RS26230 at 5430.071 kb on + strand, within BWI76_RS26230 at 5430.071 kb on + strand, within BWI76_RS26230 at 5430.079 kb on - strand, within BWI76_RS26230 at 5430.079 kb on - strand, within BWI76_RS26230 at 5430.159 kb on - strand, within BWI76_RS26230 at 5430.247 kb on + strand, within BWI76_RS26230 at 5430.249 kb on + strand, within BWI76_RS26230 at 5430.255 kb on - strand, within BWI76_RS26230 at 5430.287 kb on - strand, within BWI76_RS26230 at 5430.315 kb on + strand, within BWI76_RS26230 at 5430.460 kb on - strand, within BWI76_RS26230 at 5430.542 kb on + strand, within BWI76_RS26230 at 5430.551 kb on - strand, within BWI76_RS26230 at 5430.551 kb on - strand, within BWI76_RS26230 at 5430.559 kb on - strand, within BWI76_RS26230 at 5430.606 kb on + strand, within BWI76_RS26230 at 5430.610 kb on + strand, within BWI76_RS26230 at 5430.614 kb on - strand, within BWI76_RS26230 at 5430.693 kb on + strand, within BWI76_RS26230 at 5430.700 kb on + strand, within BWI76_RS26230 at 5430.887 kb on + strand, within BWI76_RS26230 at 5430.892 kb on + strand, within BWI76_RS26230 at 5430.988 kb on + strand, within BWI76_RS26230 at 5431.126 kb on - strand, within BWI76_RS26230 at 5431.368 kb on - strand at 5431.411 kb on + strand at 5431.411 kb on + strand at 5431.482 kb on + strand at 5431.576 kb on - strand at 5431.579 kb on + strand at 5431.587 kb on - strand at 5431.860 kb on + strand, within BWI76_RS26235 at 5431.911 kb on + strand, within BWI76_RS26235 at 5432.091 kb on - strand, within BWI76_RS26235 at 5432.294 kb on + strand, within BWI76_RS26235
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,428,388 + BWI76_RS26225 0.21 -1.9 5,428,407 + BWI76_RS26225 0.22 -0.3 5,428,530 - BWI76_RS26225 0.33 -0.2 5,428,569 - BWI76_RS26225 0.36 -0.2 5,428,714 - BWI76_RS26225 0.48 -0.1 5,428,822 + BWI76_RS26225 0.57 +1.3 5,428,822 + BWI76_RS26225 0.57 +0.1 5,428,944 - BWI76_RS26225 0.67 +0.3 5,429,056 + BWI76_RS26225 0.76 -0.8 5,429,056 + BWI76_RS26225 0.76 +1.0 5,429,062 + BWI76_RS26225 0.77 -0.5 5,429,098 + BWI76_RS26225 0.80 -0.0 5,429,179 + BWI76_RS26225 0.86 -0.8 5,429,276 + -0.9 5,429,284 - +0.3 5,429,479 - +0.2 5,429,644 - BWI76_RS26230 0.15 -0.2 5,430,001 - BWI76_RS26230 0.32 -0.4 5,430,017 + BWI76_RS26230 0.32 -0.6 5,430,031 - BWI76_RS26230 0.33 -0.1 5,430,063 + BWI76_RS26230 0.35 +0.4 5,430,071 + BWI76_RS26230 0.35 +0.8 5,430,071 + BWI76_RS26230 0.35 -3.8 5,430,079 - BWI76_RS26230 0.35 +0.4 5,430,079 - BWI76_RS26230 0.35 +0.4 5,430,159 - BWI76_RS26230 0.39 -0.4 5,430,247 + BWI76_RS26230 0.43 -0.3 5,430,249 + BWI76_RS26230 0.43 -0.1 5,430,255 - BWI76_RS26230 0.44 +0.3 5,430,287 - BWI76_RS26230 0.45 -0.4 5,430,315 + BWI76_RS26230 0.47 +0.7 5,430,460 - BWI76_RS26230 0.53 +0.4 5,430,542 + BWI76_RS26230 0.57 +0.8 5,430,551 - BWI76_RS26230 0.58 +0.4 5,430,551 - BWI76_RS26230 0.58 -0.2 5,430,559 - BWI76_RS26230 0.58 -0.2 5,430,606 + BWI76_RS26230 0.60 -1.0 5,430,610 + BWI76_RS26230 0.61 -0.4 5,430,614 - BWI76_RS26230 0.61 -0.2 5,430,693 + BWI76_RS26230 0.65 -0.2 5,430,700 + BWI76_RS26230 0.65 -0.2 5,430,887 + BWI76_RS26230 0.74 -0.4 5,430,892 + BWI76_RS26230 0.74 +0.0 5,430,988 + BWI76_RS26230 0.79 -0.1 5,431,126 - BWI76_RS26230 0.85 +0.0 5,431,368 - -0.1 5,431,411 + +0.1 5,431,411 + -0.2 5,431,482 + -0.1 5,431,576 - +0.9 5,431,579 + -0.2 5,431,587 - -0.2 5,431,860 + BWI76_RS26235 0.21 +0.1 5,431,911 + BWI76_RS26235 0.25 +0.1 5,432,091 - BWI76_RS26235 0.38 +0.1 5,432,294 + BWI76_RS26235 0.53 -1.3
Or see this region's nucleotide sequence