Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24535 and BWI76_RS24540 are separated by 8 nucleotides BWI76_RS24540 and BWI76_RS24545 are separated by 13 nucleotides BWI76_RS24545 and BWI76_RS24550 are separated by 233 nucleotides BWI76_RS24550 and BWI76_RS24555 are separated by 273 nucleotides
BWI76_RS24535: BWI76_RS24535 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 5,114,929 to 5,115,942
_RS24535
BWI76_RS24540: BWI76_RS24540 - hypothetical protein, at 5,115,951 to 5,116,166
_RS24540
BWI76_RS24545: BWI76_RS24545 - 30S ribosomal protein S21, at 5,116,180 to 5,116,395
_RS24545
BWI76_RS24550: BWI76_RS24550 - DNA primase, at 5,116,629 to 5,118,374
_RS24550
BWI76_RS24555: BWI76_RS24555 - RNA polymerase sigma factor RpoD, at 5,118,648 to 5,120,492
_RS24555
Position (kb) 5116
5117
5118
5119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5115.956 kb on - strand at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5116.003 kb on - strand, within BWI76_RS24540 at 5116.012 kb on + strand, within BWI76_RS24540 at 5116.017 kb on + strand, within BWI76_RS24540 at 5116.526 kb on + strand at 5116.531 kb on + strand at 5118.338 kb on + strand at 5118.453 kb on + strand at 5118.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,115,956 - -0.6 5,115,982 - BWI76_RS24540 0.14 -2.0 5,115,982 - BWI76_RS24540 0.14 +0.1 5,115,982 - BWI76_RS24540 0.14 +0.4 5,115,982 - BWI76_RS24540 0.14 +0.3 5,115,982 - BWI76_RS24540 0.14 -0.3 5,115,982 - BWI76_RS24540 0.14 +0.9 5,115,982 - BWI76_RS24540 0.14 -0.5 5,116,003 - BWI76_RS24540 0.24 -0.6 5,116,012 + BWI76_RS24540 0.28 -0.2 5,116,017 + BWI76_RS24540 0.31 +0.4 5,116,526 + -0.1 5,116,531 + +0.3 5,118,338 + -2.7 5,118,453 + +2.0 5,118,453 + -2.0
Or see this region's nucleotide sequence