Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20625

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20615 and BWI76_RS20620 overlap by 4 nucleotidesBWI76_RS20620 and BWI76_RS20625 overlap by 8 nucleotidesBWI76_RS20625 and BWI76_RS20630 are separated by 74 nucleotides BWI76_RS20615: BWI76_RS20615 - sodium symporter, at 4,313,756 to 4,314,754 _RS20615 BWI76_RS20620: BWI76_RS20620 - negative regulator, at 4,314,751 to 4,314,969 _RS20620 BWI76_RS20625: BWI76_RS20625 - DNA ligase (NAD(+)) LigA, at 4,314,962 to 4,316,986 _RS20625 BWI76_RS20630: BWI76_RS20630 - cell division protein ZipA, at 4,317,061 to 4,318,056 _RS20630 Position (kb) 4314 4315 4316 4317Strain fitness (log2 ratio) -2 -1 0 1at 4314.152 kb on + strand, within BWI76_RS20615at 4314.227 kb on + strand, within BWI76_RS20615at 4314.234 kb on + strand, within BWI76_RS20615at 4314.242 kb on - strand, within BWI76_RS20615at 4314.604 kb on + strand, within BWI76_RS20615at 4314.673 kb on - strandat 4314.769 kb on - strandat 4314.769 kb on - strandat 4314.784 kb on + strand, within BWI76_RS20620at 4317.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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4,314,152 + BWI76_RS20615 0.40 +0.2
4,314,227 + BWI76_RS20615 0.47 -0.9
4,314,234 + BWI76_RS20615 0.48 -0.2
4,314,242 - BWI76_RS20615 0.49 -0.4
4,314,604 + BWI76_RS20615 0.85 -0.4
4,314,673 - -0.2
4,314,769 - -1.9
4,314,769 - -0.1
4,314,784 + BWI76_RS20620 0.15 +0.9
4,317,073 - -0.7

Or see this region's nucleotide sequence