Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09245

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09240 and BWI76_RS09245 overlap by 4 nucleotidesBWI76_RS09245 and BWI76_RS09250 are separated by 114 nucleotidesBWI76_RS09250 and BWI76_RS09255 are separated by 398 nucleotides BWI76_RS09240: BWI76_RS09240 - phosphoadenosine phosphosulfate reductase, at 1,945,101 to 1,946,111 _RS09240 BWI76_RS09245: BWI76_RS09245 - bacteriophage replication gene A protein, at 1,946,108 to 1,948,519 _RS09245 BWI76_RS09250: BWI76_RS09250 - hypothetical protein, at 1,948,634 to 1,948,819 _RS09250 BWI76_RS09255: BWI76_RS09255 - hypothetical protein, at 1,949,218 to 1,950,090 _RS09255 Position (kb) 1946 1947 1948 1949Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1945.182 kb on - strandat 1945.182 kb on - strandat 1945.218 kb on - strand, within BWI76_RS09240at 1945.331 kb on + strand, within BWI76_RS09240at 1945.361 kb on + strandat 1945.535 kb on + strand, within BWI76_RS09240at 1945.606 kb on + strand, within BWI76_RS09240at 1946.216 kb on + strandat 1946.235 kb on + strandat 1946.370 kb on + strand, within BWI76_RS09245at 1946.378 kb on - strand, within BWI76_RS09245at 1946.440 kb on + strand, within BWI76_RS09245at 1946.467 kb on - strand, within BWI76_RS09245at 1946.586 kb on + strand, within BWI76_RS09245at 1946.594 kb on - strand, within BWI76_RS09245at 1946.604 kb on - strand, within BWI76_RS09245at 1946.657 kb on + strand, within BWI76_RS09245at 1946.701 kb on + strand, within BWI76_RS09245at 1946.985 kb on + strand, within BWI76_RS09245at 1947.111 kb on + strand, within BWI76_RS09245at 1947.129 kb on - strand, within BWI76_RS09245at 1947.270 kb on - strand, within BWI76_RS09245at 1947.405 kb on + strand, within BWI76_RS09245at 1947.420 kb on + strand, within BWI76_RS09245at 1947.428 kb on - strand, within BWI76_RS09245at 1947.521 kb on - strand, within BWI76_RS09245at 1947.549 kb on + strand, within BWI76_RS09245at 1947.567 kb on + strand, within BWI76_RS09245at 1947.595 kb on + strand, within BWI76_RS09245at 1947.660 kb on + strand, within BWI76_RS09245at 1947.668 kb on - strandat 1947.831 kb on - strand, within BWI76_RS09245at 1947.935 kb on + strand, within BWI76_RS09245at 1947.937 kb on + strand, within BWI76_RS09245at 1948.149 kb on - strand, within BWI76_RS09245at 1948.162 kb on - strand, within BWI76_RS09245at 1948.671 kb on + strand, within BWI76_RS09250at 1948.714 kb on - strand, within BWI76_RS09250at 1948.776 kb on + strand, within BWI76_RS09250at 1948.776 kb on + strand, within BWI76_RS09250at 1948.776 kb on + strand, within BWI76_RS09250at 1948.789 kb on - strand, within BWI76_RS09250at 1948.791 kb on + strand, within BWI76_RS09250at 1948.796 kb on + strand, within BWI76_RS09250at 1948.799 kb on - strand, within BWI76_RS09250at 1948.842 kb on + strandat 1948.877 kb on + strandat 1948.927 kb on + strandat 1948.964 kb on + strandat 1948.971 kb on - strandat 1949.002 kb on + strandat 1949.035 kb on - strandat 1949.039 kb on - strandat 1949.039 kb on - strandat 1949.039 kb on - strandat 1949.093 kb on - strandat 1949.098 kb on - strandat 1949.233 kb on + strandat 1949.243 kb on + strandat 1949.243 kb on + strandat 1949.244 kb on + strandat 1949.251 kb on + strandat 1949.337 kb on + strand, within BWI76_RS09255at 1949.337 kb on + strand, within BWI76_RS09255at 1949.512 kb on + strand, within BWI76_RS09255

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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1,945,182 - -0.4
1,945,182 - +0.0
1,945,218 - BWI76_RS09240 0.12 -0.2
1,945,331 + BWI76_RS09240 0.23 -0.3
1,945,361 + +3.8
1,945,535 + BWI76_RS09240 0.43 -1.6
1,945,606 + BWI76_RS09240 0.50 +0.4
1,946,216 + -1.8
1,946,235 + +1.2
1,946,370 + BWI76_RS09245 0.11 +0.7
1,946,378 - BWI76_RS09245 0.11 -0.4
1,946,440 + BWI76_RS09245 0.14 -0.0
1,946,467 - BWI76_RS09245 0.15 +0.3
1,946,586 + BWI76_RS09245 0.20 +0.1
1,946,594 - BWI76_RS09245 0.20 -0.3
1,946,604 - BWI76_RS09245 0.21 +0.4
1,946,657 + BWI76_RS09245 0.23 +0.1
1,946,701 + BWI76_RS09245 0.25 +0.4
1,946,985 + BWI76_RS09245 0.36 +1.1
1,947,111 + BWI76_RS09245 0.42 +0.0
1,947,129 - BWI76_RS09245 0.42 -0.3
1,947,270 - BWI76_RS09245 0.48 +0.2
1,947,405 + BWI76_RS09245 0.54 +0.2
1,947,420 + BWI76_RS09245 0.54 +0.4
1,947,428 - BWI76_RS09245 0.55 +0.6
1,947,521 - BWI76_RS09245 0.59 +0.0
1,947,549 + BWI76_RS09245 0.60 -0.3
1,947,567 + BWI76_RS09245 0.60 -0.2
1,947,595 + BWI76_RS09245 0.62 +0.0
1,947,660 + BWI76_RS09245 0.64 -0.2
1,947,668 - +1.9
1,947,831 - BWI76_RS09245 0.71 -0.1
1,947,935 + BWI76_RS09245 0.76 +0.0
1,947,937 + BWI76_RS09245 0.76 +1.8
1,948,149 - BWI76_RS09245 0.85 -0.3
1,948,162 - BWI76_RS09245 0.85 +0.1
1,948,671 + BWI76_RS09250 0.20 +0.7
1,948,714 - BWI76_RS09250 0.43 +0.7
1,948,776 + BWI76_RS09250 0.76 +0.4
1,948,776 + BWI76_RS09250 0.76 +0.2
1,948,776 + BWI76_RS09250 0.76 -1.5
1,948,789 - BWI76_RS09250 0.83 -0.6
1,948,791 + BWI76_RS09250 0.84 +0.4
1,948,796 + BWI76_RS09250 0.87 -0.1
1,948,799 - BWI76_RS09250 0.89 -0.6
1,948,842 + -0.0
1,948,877 + +0.8
1,948,927 + -0.7
1,948,964 + +0.2
1,948,971 - -0.6
1,949,002 + +0.5
1,949,035 - +0.3
1,949,039 - +1.3
1,949,039 - -0.4
1,949,039 - +1.0
1,949,093 - -1.0
1,949,098 - -1.2
1,949,233 + +1.0
1,949,243 + -2.5
1,949,243 + -1.9
1,949,244 + -0.2
1,949,251 + -0.5
1,949,337 + BWI76_RS09255 0.14 +1.4
1,949,337 + BWI76_RS09255 0.14 -0.1
1,949,512 + BWI76_RS09255 0.34 +1.2

Or see this region's nucleotide sequence