Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08550 and BWI76_RS08555 are separated by 26 nucleotides BWI76_RS08555 and BWI76_RS08560 are separated by 3 nucleotides BWI76_RS08560 and BWI76_RS08565 are separated by 144 nucleotides BWI76_RS08565 and BWI76_RS08570 are separated by 35 nucleotides BWI76_RS08570 and BWI76_RS08580 are separated by 456 nucleotides BWI76_RS08580 and BWI76_RS08585 are separated by 35 nucleotides BWI76_RS08585 and BWI76_RS08590 overlap by 4 nucleotides
BWI76_RS08550: BWI76_RS08550 - tRNA-Lys, at 1,809,293 to 1,809,368
_RS08550
BWI76_RS08555: BWI76_RS08555 - tRNA-Val, at 1,809,395 to 1,809,470
_RS08555
BWI76_RS08560: BWI76_RS08560 - tRNA-Lys, at 1,809,474 to 1,809,549
_RS08560
BWI76_RS08565: BWI76_RS08565 - tRNA-Lys, at 1,809,694 to 1,809,769
_RS08565
BWI76_RS08570: BWI76_RS08570 - tRNA-Lys, at 1,809,805 to 1,809,880
_RS08570
BWI76_RS08580: BWI76_RS08580 - quinolinate synthetase, at 1,810,337 to 1,811,380
_RS08580
BWI76_RS08585: BWI76_RS08585 - nicotinamide riboside transporter PnuC, at 1,811,416 to 1,812,135
_RS08585
BWI76_RS08590: BWI76_RS08590 - zinc transporter ZitB, at 1,812,132 to 1,813,076
_RS08590
Position (kb)
1810
1811
1812 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1809.582 kb on + strand at 1810.013 kb on + strand at 1810.288 kb on - strand at 1810.504 kb on - strand, within BWI76_RS08580 at 1810.932 kb on + strand, within BWI76_RS08580 at 1811.226 kb on + strand, within BWI76_RS08580 at 1811.471 kb on + strand at 1811.481 kb on + strand at 1811.667 kb on - strand, within BWI76_RS08585 at 1811.805 kb on - strand, within BWI76_RS08585 at 1811.846 kb on + strand, within BWI76_RS08585
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 1,809,582 + +0.7 1,810,013 + +0.4 1,810,288 - -0.8 1,810,504 - BWI76_RS08580 0.16 -3.0 1,810,932 + BWI76_RS08580 0.57 -2.3 1,811,226 + BWI76_RS08580 0.85 -1.4 1,811,471 + -0.2 1,811,481 + +0.1 1,811,667 - BWI76_RS08585 0.35 +0.3 1,811,805 - BWI76_RS08585 0.54 -0.4 1,811,846 + BWI76_RS08585 0.60 +1.5
Or see this region's nucleotide sequence