Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06810 and BWI76_RS06815 are separated by 150 nucleotides BWI76_RS06815 and BWI76_RS06820 are separated by 91 nucleotides BWI76_RS06820 and BWI76_RS06825 are separated by 57 nucleotides BWI76_RS06825 and BWI76_RS06830 overlap by 1 nucleotides
BWI76_RS06810: BWI76_RS06810 - hypothetical protein, at 1,428,919 to 1,429,296
_RS06810
BWI76_RS06815: BWI76_RS06815 - adenine phosphoribosyltransferase, at 1,429,447 to 1,429,998
_RS06815
BWI76_RS06820: BWI76_RS06820 - DNA polymerase III subunit gamma/tau, at 1,430,090 to 1,431,991
_RS06820
BWI76_RS06825: BWI76_RS06825 - nucleoid-associated protein, YbaB/EbfC family, at 1,432,049 to 1,432,381
_RS06825
BWI76_RS06830: BWI76_RS06830 - recombination protein RecR, at 1,432,381 to 1,432,986
_RS06830
Position (kb)
1430
1431
1432 Strain fitness (log2 ratio)
-2
-1
0
1 at 1429.141 kb on - strand, within BWI76_RS06810 at 1429.250 kb on - strand, within BWI76_RS06810 at 1429.290 kb on + strand at 1429.367 kb on - strand at 1429.498 kb on + strand at 1429.498 kb on + strand at 1429.506 kb on - strand, within BWI76_RS06815 at 1429.585 kb on - strand, within BWI76_RS06815 at 1429.696 kb on - strand, within BWI76_RS06815 at 1429.891 kb on + strand, within BWI76_RS06815 at 1432.436 kb on + strand at 1432.636 kb on + strand, within BWI76_RS06830 at 1432.694 kb on + strand, within BWI76_RS06830 at 1432.869 kb on + strand, within BWI76_RS06830 at 1432.874 kb on + strand, within BWI76_RS06830
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 1,429,141 - BWI76_RS06810 0.59 +0.3 1,429,250 - BWI76_RS06810 0.88 -0.8 1,429,290 + -0.1 1,429,367 - -0.8 1,429,498 + +0.5 1,429,498 + -1.5 1,429,506 - BWI76_RS06815 0.11 +0.4 1,429,585 - BWI76_RS06815 0.25 -0.3 1,429,696 - BWI76_RS06815 0.45 +0.1 1,429,891 + BWI76_RS06815 0.80 -1.2 1,432,436 + -1.0 1,432,636 + BWI76_RS06830 0.42 -0.6 1,432,694 + BWI76_RS06830 0.52 -1.8 1,432,869 + BWI76_RS06830 0.81 -0.5 1,432,874 + BWI76_RS06830 0.81 -0.8
Or see this region's nucleotide sequence