Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04570 and BWI76_RS04575 are separated by 187 nucleotides BWI76_RS04575 and BWI76_RS04580 are separated by 214 nucleotides BWI76_RS04580 and BWI76_RS04585 are separated by 73 nucleotides
BWI76_RS04570: BWI76_RS04570 - RNA polymerase-associated protein RapA, at 946,783 to 949,689
_RS04570
BWI76_RS04575: BWI76_RS04575 - DNA polymerase II, at 949,877 to 952,234
_RS04575
BWI76_RS04580: BWI76_RS04580 - L-ribulose-5-phosphate 4-epimerase, at 952,449 to 953,144
_RS04580
BWI76_RS04585: BWI76_RS04585 - L-arabinose isomerase, at 953,218 to 954,720
_RS04585
Position (kb) 949
950
951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 948.965 kb on - strand, within BWI76_RS04570 at 948.970 kb on + strand, within BWI76_RS04570 at 949.017 kb on + strand, within BWI76_RS04570 at 949.025 kb on - strand, within BWI76_RS04570 at 949.520 kb on + strand at 949.766 kb on - strand at 949.800 kb on - strand at 949.939 kb on - strand at 949.988 kb on - strand at 950.031 kb on + strand at 950.082 kb on + strand at 950.143 kb on + strand, within BWI76_RS04575 at 950.162 kb on + strand, within BWI76_RS04575 at 950.170 kb on - strand, within BWI76_RS04575 at 950.210 kb on - strand, within BWI76_RS04575 at 950.339 kb on - strand, within BWI76_RS04575 at 950.463 kb on + strand, within BWI76_RS04575 at 950.463 kb on - strand, within BWI76_RS04575 at 950.793 kb on - strand, within BWI76_RS04575 at 950.813 kb on - strand, within BWI76_RS04575 at 950.872 kb on - strand, within BWI76_RS04575 at 950.889 kb on + strand, within BWI76_RS04575 at 950.956 kb on + strand, within BWI76_RS04575 at 950.986 kb on - strand, within BWI76_RS04575 at 951.011 kb on - strand, within BWI76_RS04575 at 951.030 kb on + strand, within BWI76_RS04575 at 951.041 kb on + strand, within BWI76_RS04575 at 951.043 kb on - strand, within BWI76_RS04575 at 951.051 kb on + strand, within BWI76_RS04575 at 951.416 kb on + strand, within BWI76_RS04575 at 951.430 kb on - strand, within BWI76_RS04575 at 951.556 kb on + strand, within BWI76_RS04575 at 951.723 kb on - strand, within BWI76_RS04575 at 951.734 kb on - strand, within BWI76_RS04575 at 952.102 kb on - strand at 952.274 kb on - strand at 952.441 kb on - strand at 952.643 kb on + strand, within BWI76_RS04580 at 952.865 kb on - strand, within BWI76_RS04580 at 952.865 kb on - strand, within BWI76_RS04580 at 952.915 kb on - strand, within BWI76_RS04580 at 952.935 kb on - strand, within BWI76_RS04580 at 952.947 kb on - strand, within BWI76_RS04580 at 953.039 kb on + strand, within BWI76_RS04580 at 953.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 948,965 - BWI76_RS04570 0.75 -0.8 948,970 + BWI76_RS04570 0.75 -0.4 949,017 + BWI76_RS04570 0.77 -0.1 949,025 - BWI76_RS04570 0.77 -3.2 949,520 + -1.7 949,766 - -0.9 949,800 - -1.0 949,939 - -0.1 949,988 - -0.5 950,031 + +0.1 950,082 + -0.5 950,143 + BWI76_RS04575 0.11 -2.1 950,162 + BWI76_RS04575 0.12 +0.1 950,170 - BWI76_RS04575 0.12 -1.3 950,210 - BWI76_RS04575 0.14 -0.5 950,339 - BWI76_RS04575 0.20 +0.1 950,463 + BWI76_RS04575 0.25 +0.8 950,463 - BWI76_RS04575 0.25 -0.4 950,793 - BWI76_RS04575 0.39 +0.3 950,813 - BWI76_RS04575 0.40 -0.5 950,872 - BWI76_RS04575 0.42 -1.0 950,889 + BWI76_RS04575 0.43 +0.2 950,956 + BWI76_RS04575 0.46 -0.6 950,986 - BWI76_RS04575 0.47 +0.9 951,011 - BWI76_RS04575 0.48 -0.8 951,030 + BWI76_RS04575 0.49 -0.9 951,041 + BWI76_RS04575 0.49 +0.4 951,043 - BWI76_RS04575 0.49 -2.4 951,051 + BWI76_RS04575 0.50 -0.8 951,416 + BWI76_RS04575 0.65 -0.0 951,430 - BWI76_RS04575 0.66 -2.3 951,556 + BWI76_RS04575 0.71 -0.8 951,723 - BWI76_RS04575 0.78 -0.8 951,734 - BWI76_RS04575 0.79 -0.6 952,102 - -0.4 952,274 - -0.8 952,441 - -1.2 952,643 + BWI76_RS04580 0.28 -0.1 952,865 - BWI76_RS04580 0.60 -0.7 952,865 - BWI76_RS04580 0.60 -0.3 952,915 - BWI76_RS04580 0.67 +0.6 952,935 - BWI76_RS04580 0.70 +0.3 952,947 - BWI76_RS04580 0.72 -0.3 953,039 + BWI76_RS04580 0.85 +0.2 953,089 + -0.3
Or see this region's nucleotide sequence