Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03995 and BWI76_RS04000 are separated by 65 nucleotides BWI76_RS04000 and BWI76_RS04005 are separated by 2 nucleotides BWI76_RS04005 and BWI76_RS04010 are separated by 108 nucleotides BWI76_RS04010 and BWI76_RS04015 overlap by 10 nucleotides
BWI76_RS03995: BWI76_RS03995 - hypothetical protein, at 827,919 to 828,413
_RS03995
BWI76_RS04000: BWI76_RS04000 - DNA replication protein DnaC, at 828,479 to 829,216
_RS04000
BWI76_RS04005: BWI76_RS04005 - primosomal protein DnaI, at 829,219 to 829,758
_RS04005
BWI76_RS04010: BWI76_RS04010 - hypothetical protein, at 829,867 to 830,340
_RS04010
BWI76_RS04015: BWI76_RS04015 - membrane protein, at 830,331 to 831,107
_RS04015
Position (kb) 829
830 Strain fitness (log2 ratio) -1
0
1 at 828.222 kb on - strand, within BWI76_RS03995 at 828.337 kb on + strand, within BWI76_RS03995 at 829.789 kb on - strand at 829.807 kb on - strand at 829.888 kb on - strand at 829.991 kb on - strand, within BWI76_RS04010 at 830.052 kb on + strand, within BWI76_RS04010 at 830.106 kb on - strand, within BWI76_RS04010 at 830.152 kb on - strand, within BWI76_RS04010 at 830.228 kb on + strand, within BWI76_RS04010 at 830.236 kb on - strand, within BWI76_RS04010 at 830.297 kb on + strand at 830.297 kb on + strand at 830.305 kb on - strand at 830.305 kb on - strand at 830.383 kb on - strand at 830.566 kb on - strand, within BWI76_RS04015 at 830.566 kb on - strand, within BWI76_RS04015 at 830.625 kb on + strand, within BWI76_RS04015
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 828,222 - BWI76_RS03995 0.61 -0.0 828,337 + BWI76_RS03995 0.84 +0.6 829,789 - -0.2 829,807 - -0.5 829,888 - -1.4 829,991 - BWI76_RS04010 0.26 -0.5 830,052 + BWI76_RS04010 0.39 +0.3 830,106 - BWI76_RS04010 0.50 -0.6 830,152 - BWI76_RS04010 0.60 -0.1 830,228 + BWI76_RS04010 0.76 -1.1 830,236 - BWI76_RS04010 0.78 +0.0 830,297 + +0.4 830,297 + +0.8 830,305 - -0.4 830,305 - -0.8 830,383 - +1.6 830,566 - BWI76_RS04015 0.30 -0.1 830,566 - BWI76_RS04015 0.30 -0.6 830,625 + BWI76_RS04015 0.38 +0.1
Or see this region's nucleotide sequence