Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03355

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03345 and BWI76_RS03350 are separated by 20 nucleotidesBWI76_RS03350 and BWI76_RS03355 are separated by 85 nucleotidesBWI76_RS03355 and BWI76_RS03360 are separated by 51 nucleotides BWI76_RS03345: BWI76_RS03345 - prophage P4 integrase, at 689,666 to 690,937 _RS03345 BWI76_RS03350: BWI76_RS03350 - putative regulatory protein, at 690,958 to 691,143 _RS03350 BWI76_RS03355: BWI76_RS03355 - hypothetical protein, at 691,229 to 692,290 _RS03355 BWI76_RS03360: BWI76_RS03360 - IS3 family transposase, at 692,342 to 693,549 _RS03360 Position (kb) 691 692 693Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 690.234 kb on + strand, within BWI76_RS03345at 690.304 kb on + strand, within BWI76_RS03345at 690.309 kb on + strand, within BWI76_RS03345at 690.394 kb on + strand, within BWI76_RS03345at 690.396 kb on + strand, within BWI76_RS03345at 690.401 kb on + strand, within BWI76_RS03345at 690.406 kb on + strand, within BWI76_RS03345at 690.507 kb on + strand, within BWI76_RS03345at 690.514 kb on + strand, within BWI76_RS03345at 690.524 kb on + strand, within BWI76_RS03345at 690.536 kb on - strand, within BWI76_RS03345at 690.536 kb on - strand, within BWI76_RS03345at 690.551 kb on - strandat 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.709 kb on + strand, within BWI76_RS03345at 690.714 kb on + strand, within BWI76_RS03345at 690.717 kb on - strand, within BWI76_RS03345at 690.717 kb on - strand, within BWI76_RS03345at 690.717 kb on - strandat 690.721 kb on + strand, within BWI76_RS03345at 690.722 kb on - strand, within BWI76_RS03345at 690.726 kb on + strand, within BWI76_RS03345at 690.732 kb on + strand, within BWI76_RS03345at 690.732 kb on + strand, within BWI76_RS03345at 690.732 kb on + strand, within BWI76_RS03345at 690.732 kb on + strand, within BWI76_RS03345at 690.732 kb on + strand, within BWI76_RS03345at 690.740 kb on - strand, within BWI76_RS03345at 690.740 kb on - strand, within BWI76_RS03345at 690.768 kb on - strand, within BWI76_RS03345at 690.825 kb on + strandat 690.833 kb on - strandat 690.977 kb on - strand, within BWI76_RS03350at 691.166 kb on + strandat 691.178 kb on + strandat 691.360 kb on - strand, within BWI76_RS03355at 691.411 kb on + strand, within BWI76_RS03355at 691.483 kb on - strand, within BWI76_RS03355at 691.519 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.599 kb on + strand, within BWI76_RS03355at 691.606 kb on + strand, within BWI76_RS03355at 691.607 kb on - strand, within BWI76_RS03355at 691.607 kb on - strand, within BWI76_RS03355at 691.607 kb on - strand, within BWI76_RS03355at 691.607 kb on - strand, within BWI76_RS03355at 691.607 kb on - strand, within BWI76_RS03355at 691.614 kb on - strand, within BWI76_RS03355at 691.614 kb on - strandat 691.619 kb on + strand, within BWI76_RS03355at 691.708 kb on + strand, within BWI76_RS03355at 691.708 kb on + strand, within BWI76_RS03355at 691.709 kb on + strand, within BWI76_RS03355at 691.709 kb on + strand, within BWI76_RS03355at 691.717 kb on - strandat 691.726 kb on + strand, within BWI76_RS03355at 691.727 kb on + strandat 691.785 kb on + strand, within BWI76_RS03355at 691.785 kb on + strand, within BWI76_RS03355at 691.786 kb on + strand, within BWI76_RS03355at 691.793 kb on - strand, within BWI76_RS03355at 691.808 kb on - strand, within BWI76_RS03355at 691.810 kb on + strand, within BWI76_RS03355at 691.810 kb on + strandat 691.811 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.816 kb on + strand, within BWI76_RS03355at 691.818 kb on - strand, within BWI76_RS03355at 691.824 kb on - strand, within BWI76_RS03355at 691.824 kb on - strand, within BWI76_RS03355at 691.824 kb on - strand, within BWI76_RS03355at 691.824 kb on - strand, within BWI76_RS03355at 691.832 kb on + strand, within BWI76_RS03355at 691.832 kb on + strand, within BWI76_RS03355at 691.851 kb on - strand, within BWI76_RS03355at 691.904 kb on + strand, within BWI76_RS03355at 691.904 kb on + strand, within BWI76_RS03355at 691.904 kb on + strand, within BWI76_RS03355at 691.904 kb on + strand, within BWI76_RS03355at 691.904 kb on + strand, within BWI76_RS03355at 691.909 kb on + strand, within BWI76_RS03355at 691.912 kb on - strand, within BWI76_RS03355at 691.921 kb on + strand, within BWI76_RS03355at 691.921 kb on + strand, within BWI76_RS03355at 691.921 kb on + strand, within BWI76_RS03355at 691.921 kb on + strand, within BWI76_RS03355at 691.921 kb on + strand, within BWI76_RS03355at 691.921 kb on + strand, within BWI76_RS03355at 691.953 kb on + strand, within BWI76_RS03355at 691.968 kb on + strand, within BWI76_RS03355at 691.968 kb on + strand, within BWI76_RS03355at 691.976 kb on - strand, within BWI76_RS03355at 691.991 kb on + strand, within BWI76_RS03355at 691.991 kb on + strandat 691.991 kb on + strand, within BWI76_RS03355at 691.999 kb on + strand, within BWI76_RS03355at 692.010 kb on - strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.018 kb on + strand, within BWI76_RS03355at 692.026 kb on - strand, within BWI76_RS03355at 692.026 kb on - strand, within BWI76_RS03355at 692.026 kb on - strand, within BWI76_RS03355at 692.026 kb on - strand, within BWI76_RS03355at 692.026 kb on - strand, within BWI76_RS03355at 692.045 kb on - strand, within BWI76_RS03355at 692.077 kb on + strand, within BWI76_RS03355at 692.212 kb on + strandat 692.212 kb on + strandat 692.218 kb on + strandat 692.225 kb on + strandat 692.225 kb on + strandat 692.234 kb on + strandat 692.237 kb on + strandat 692.237 kb on + strandat 692.245 kb on - strandat 692.245 kb on - strandat 692.248 kb on - strandat 692.264 kb on - strandat 692.266 kb on - strandat 692.268 kb on + strandat 692.269 kb on + strandat 692.269 kb on + strandat 692.269 kb on - strandat 692.279 kb on - strandat 692.322 kb on - strandat 692.329 kb on + strandat 692.329 kb on - strandat 692.331 kb on + strandat 692.353 kb on - strandat 692.384 kb on + strandat 692.392 kb on + strandat 692.392 kb on - strandat 692.398 kb on - strandat 692.400 kb on + strandat 692.447 kb on + strandat 692.455 kb on - strandat 692.460 kb on - strandat 692.516 kb on + strand, within BWI76_RS03360at 692.524 kb on - strand, within BWI76_RS03360at 692.546 kb on + strand, within BWI76_RS03360at 692.556 kb on + strand, within BWI76_RS03360at 692.556 kb on + strand, within BWI76_RS03360at 692.564 kb on - strand, within BWI76_RS03360at 692.567 kb on - strand, within BWI76_RS03360at 692.591 kb on + strand, within BWI76_RS03360at 692.618 kb on - strand, within BWI76_RS03360at 692.618 kb on - strand, within BWI76_RS03360at 692.707 kb on - strand, within BWI76_RS03360at 692.733 kb on - strand, within BWI76_RS03360at 692.744 kb on + strand, within BWI76_RS03360at 692.752 kb on - strand, within BWI76_RS03360at 692.753 kb on - strand, within BWI76_RS03360at 692.776 kb on - strand, within BWI76_RS03360at 692.778 kb on + strand, within BWI76_RS03360at 692.832 kb on - strand, within BWI76_RS03360at 692.855 kb on - strand, within BWI76_RS03360at 693.026 kb on + strand, within BWI76_RS03360at 693.098 kb on + strand, within BWI76_RS03360at 693.165 kb on - strandat 693.167 kb on - strand, within BWI76_RS03360at 693.173 kb on + strand, within BWI76_RS03360at 693.191 kb on + strand, within BWI76_RS03360at 693.249 kb on - strand, within BWI76_RS03360

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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690,234 + BWI76_RS03345 0.45 -0.7
690,304 + BWI76_RS03345 0.50 +0.9
690,309 + BWI76_RS03345 0.51 -1.4
690,394 + BWI76_RS03345 0.57 -0.1
690,396 + BWI76_RS03345 0.57 +0.7
690,401 + BWI76_RS03345 0.58 -0.7
690,406 + BWI76_RS03345 0.58 +1.9
690,507 + BWI76_RS03345 0.66 +0.4
690,514 + BWI76_RS03345 0.67 -2.1
690,524 + BWI76_RS03345 0.67 -0.1
690,536 - BWI76_RS03345 0.68 +0.5
690,536 - BWI76_RS03345 0.68 -5.2
690,551 - -1.7
690,709 + BWI76_RS03345 0.82 +0.7
690,709 + BWI76_RS03345 0.82 -0.7
690,709 + BWI76_RS03345 0.82 -0.9
690,709 + BWI76_RS03345 0.82 +0.0
690,709 + BWI76_RS03345 0.82 -0.4
690,709 + BWI76_RS03345 0.82 +1.3
690,709 + BWI76_RS03345 0.82 -0.9
690,709 + BWI76_RS03345 0.82 +0.7
690,714 + BWI76_RS03345 0.82 +0.3
690,717 - BWI76_RS03345 0.83 +1.1
690,717 - BWI76_RS03345 0.83 -0.6
690,717 - +2.3
690,721 + BWI76_RS03345 0.83 -3.1
690,722 - BWI76_RS03345 0.83 +0.2
690,726 + BWI76_RS03345 0.83 -2.0
690,732 + BWI76_RS03345 0.84 +0.3
690,732 + BWI76_RS03345 0.84 -0.8
690,732 + BWI76_RS03345 0.84 +0.4
690,732 + BWI76_RS03345 0.84 -2.6
690,732 + BWI76_RS03345 0.84 +1.1
690,740 - BWI76_RS03345 0.84 +0.4
690,740 - BWI76_RS03345 0.84 +0.6
690,768 - BWI76_RS03345 0.87 +2.9
690,825 + -0.1
690,833 - -0.4
690,977 - BWI76_RS03350 0.10 +0.1
691,166 + -2.2
691,178 + -1.1
691,360 - BWI76_RS03355 0.12 +0.9
691,411 + BWI76_RS03355 0.17 +0.2
691,483 - BWI76_RS03355 0.24 -1.6
691,519 + BWI76_RS03355 0.27 -0.0
691,599 + BWI76_RS03355 0.35 -0.1
691,599 + BWI76_RS03355 0.35 -0.9
691,599 + BWI76_RS03355 0.35 -0.3
691,599 + BWI76_RS03355 0.35 -0.9
691,599 + BWI76_RS03355 0.35 +0.6
691,599 + BWI76_RS03355 0.35 -1.0
691,599 + BWI76_RS03355 0.35 +1.9
691,599 + BWI76_RS03355 0.35 +0.2
691,599 + BWI76_RS03355 0.35 -1.0
691,599 + BWI76_RS03355 0.35 -1.6
691,606 + BWI76_RS03355 0.35 -0.3
691,607 - BWI76_RS03355 0.36 -0.9
691,607 - BWI76_RS03355 0.36 -2.2
691,607 - BWI76_RS03355 0.36 +0.1
691,607 - BWI76_RS03355 0.36 +0.7
691,607 - BWI76_RS03355 0.36 -2.6
691,614 - BWI76_RS03355 0.36 +0.9
691,614 - +0.3
691,619 + BWI76_RS03355 0.37 -0.1
691,708 + BWI76_RS03355 0.45 -0.1
691,708 + BWI76_RS03355 0.45 -0.4
691,709 + BWI76_RS03355 0.45 +0.2
691,709 + BWI76_RS03355 0.45 -2.0
691,717 - -0.3
691,726 + BWI76_RS03355 0.47 -0.0
691,727 + -2.3
691,785 + BWI76_RS03355 0.52 +0.7
691,785 + BWI76_RS03355 0.52 -2.0
691,786 + BWI76_RS03355 0.52 +1.1
691,793 - BWI76_RS03355 0.53 -0.3
691,808 - BWI76_RS03355 0.55 +0.8
691,810 + BWI76_RS03355 0.55 -0.1
691,810 + +0.9
691,811 + BWI76_RS03355 0.55 -0.9
691,816 + BWI76_RS03355 0.55 -1.4
691,816 + BWI76_RS03355 0.55 -2.2
691,816 + BWI76_RS03355 0.55 -1.2
691,816 + BWI76_RS03355 0.55 -1.1
691,816 + BWI76_RS03355 0.55 -0.8
691,816 + BWI76_RS03355 0.55 -1.4
691,816 + BWI76_RS03355 0.55 -2.6
691,816 + BWI76_RS03355 0.55 -1.2
691,818 - BWI76_RS03355 0.55 +1.8
691,824 - BWI76_RS03355 0.56 +1.0
691,824 - BWI76_RS03355 0.56 -0.4
691,824 - BWI76_RS03355 0.56 -1.1
691,824 - BWI76_RS03355 0.56 +0.2
691,832 + BWI76_RS03355 0.57 +0.5
691,832 + BWI76_RS03355 0.57 +1.1
691,851 - BWI76_RS03355 0.59 +1.6
691,904 + BWI76_RS03355 0.64 +0.5
691,904 + BWI76_RS03355 0.64 -0.1
691,904 + BWI76_RS03355 0.64 -0.9
691,904 + BWI76_RS03355 0.64 +2.9
691,904 + BWI76_RS03355 0.64 -1.4
691,909 + BWI76_RS03355 0.64 -1.4
691,912 - BWI76_RS03355 0.64 -0.8
691,921 + BWI76_RS03355 0.65 +1.0
691,921 + BWI76_RS03355 0.65 +1.9
691,921 + BWI76_RS03355 0.65 +0.8
691,921 + BWI76_RS03355 0.65 +0.4
691,921 + BWI76_RS03355 0.65 -0.0
691,921 + BWI76_RS03355 0.65 -0.8
691,953 + BWI76_RS03355 0.68 -0.1
691,968 + BWI76_RS03355 0.70 +0.7
691,968 + BWI76_RS03355 0.70 -1.3
691,976 - BWI76_RS03355 0.70 -0.2
691,991 + BWI76_RS03355 0.72 +0.4
691,991 + +2.1
691,991 + BWI76_RS03355 0.72 -1.3
691,999 + BWI76_RS03355 0.73 -0.4
692,010 - BWI76_RS03355 0.74 -2.8
692,018 + BWI76_RS03355 0.74 -0.9
692,018 + BWI76_RS03355 0.74 +0.2
692,018 + BWI76_RS03355 0.74 +2.0
692,018 + BWI76_RS03355 0.74 -0.7
692,018 + BWI76_RS03355 0.74 -0.7
692,018 + BWI76_RS03355 0.74 -1.3
692,018 + BWI76_RS03355 0.74 +1.0
692,018 + BWI76_RS03355 0.74 -0.7
692,018 + BWI76_RS03355 0.74 +0.2
692,018 + BWI76_RS03355 0.74 +0.8
692,018 + BWI76_RS03355 0.74 +0.2
692,018 + BWI76_RS03355 0.74 +0.0
692,018 + BWI76_RS03355 0.74 -0.2
692,018 + BWI76_RS03355 0.74 +0.1
692,026 - BWI76_RS03355 0.75 -2.0
692,026 - BWI76_RS03355 0.75 +0.5
692,026 - BWI76_RS03355 0.75 +0.8
692,026 - BWI76_RS03355 0.75 +0.8
692,026 - BWI76_RS03355 0.75 -1.3
692,045 - BWI76_RS03355 0.77 -1.1
692,077 + BWI76_RS03355 0.80 +0.6
692,212 + +0.0
692,212 + -2.0
692,218 + -1.2
692,225 + -1.4
692,225 + -0.8
692,234 + -0.4
692,237 + -0.5
692,237 + +0.6
692,245 - -0.9
692,245 - +2.3
692,248 - -0.2
692,264 - +0.6
692,266 - +1.0
692,268 + -2.3
692,269 + -0.2
692,269 + +1.2
692,269 - +3.5
692,279 - +0.1
692,322 - +0.4
692,329 + -0.0
692,329 - -3.4
692,331 + +0.1
692,353 - -0.5
692,384 + +0.5
692,392 + -0.0
692,392 - -0.0
692,398 - -0.1
692,400 + -0.8
692,447 + +0.0
692,455 - -0.5
692,460 - +0.6
692,516 + BWI76_RS03360 0.14 -0.5
692,524 - BWI76_RS03360 0.15 +0.0
692,546 + BWI76_RS03360 0.17 -0.4
692,556 + BWI76_RS03360 0.18 -0.5
692,556 + BWI76_RS03360 0.18 -0.5
692,564 - BWI76_RS03360 0.18 -0.2
692,567 - BWI76_RS03360 0.19 +0.0
692,591 + BWI76_RS03360 0.21 -0.3
692,618 - BWI76_RS03360 0.23 +2.1
692,618 - BWI76_RS03360 0.23 +0.4
692,707 - BWI76_RS03360 0.30 -0.4
692,733 - BWI76_RS03360 0.32 +0.3
692,744 + BWI76_RS03360 0.33 +0.6
692,752 - BWI76_RS03360 0.34 +0.4
692,753 - BWI76_RS03360 0.34 +0.3
692,776 - BWI76_RS03360 0.36 -0.4
692,778 + BWI76_RS03360 0.36 -2.0
692,832 - BWI76_RS03360 0.41 +0.3
692,855 - BWI76_RS03360 0.42 +0.2
693,026 + BWI76_RS03360 0.57 +0.1
693,098 + BWI76_RS03360 0.63 -1.4
693,165 - +1.9
693,167 - BWI76_RS03360 0.68 -0.0
693,173 + BWI76_RS03360 0.69 -0.2
693,191 + BWI76_RS03360 0.70 +0.4
693,249 - BWI76_RS03360 0.75 -0.6

Or see this region's nucleotide sequence