Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03325 and BWI76_RS03330 overlap by 2 nucleotides BWI76_RS03330 and BWI76_RS03335 are separated by 933 nucleotides
BWI76_RS03325: BWI76_RS03325 - LysR family transcriptional regulator, at 685,212 to 686,105
_RS03325
BWI76_RS03330: BWI76_RS03330 - putative hydrolase, at 686,104 to 687,396
_RS03330
BWI76_RS03335: BWI76_RS03335 - hypothetical protein, at 688,330 to 688,578
_RS03335
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 685.161 kb on - strand at 685.170 kb on + strand at 685.178 kb on - strand at 685.187 kb on + strand at 685.222 kb on + strand at 685.225 kb on + strand at 685.225 kb on + strand at 685.232 kb on + strand at 685.233 kb on - strand at 685.233 kb on - strand at 685.243 kb on + strand at 685.243 kb on - strand at 685.249 kb on - strand at 685.289 kb on + strand at 685.305 kb on + strand, within BWI76_RS03325 at 685.305 kb on + strand, within BWI76_RS03325 at 685.305 kb on + strand, within BWI76_RS03325 at 685.313 kb on - strand, within BWI76_RS03325 at 685.320 kb on + strand at 685.336 kb on - strand, within BWI76_RS03325 at 685.354 kb on + strand, within BWI76_RS03325 at 685.363 kb on + strand, within BWI76_RS03325 at 685.371 kb on - strand, within BWI76_RS03325 at 685.371 kb on - strand, within BWI76_RS03325 at 685.373 kb on + strand, within BWI76_RS03325 at 685.420 kb on + strand, within BWI76_RS03325 at 685.430 kb on + strand, within BWI76_RS03325 at 685.430 kb on + strand, within BWI76_RS03325 at 685.438 kb on - strand, within BWI76_RS03325 at 685.465 kb on + strand, within BWI76_RS03325 at 685.472 kb on + strand, within BWI76_RS03325 at 685.481 kb on + strand, within BWI76_RS03325 at 685.488 kb on + strand, within BWI76_RS03325 at 685.489 kb on - strand, within BWI76_RS03325 at 685.489 kb on - strand, within BWI76_RS03325 at 685.586 kb on + strand, within BWI76_RS03325 at 685.690 kb on + strand, within BWI76_RS03325 at 685.952 kb on + strand, within BWI76_RS03325 at 685.952 kb on + strand, within BWI76_RS03325 at 685.952 kb on + strand, within BWI76_RS03325 at 685.960 kb on - strand, within BWI76_RS03325 at 685.960 kb on - strand, within BWI76_RS03325 at 685.960 kb on - strand, within BWI76_RS03325 at 685.960 kb on - strand, within BWI76_RS03325 at 686.116 kb on - strand at 686.118 kb on + strand at 686.118 kb on + strand at 686.118 kb on + strand at 686.126 kb on - strand at 686.147 kb on + strand at 686.175 kb on + strand at 686.248 kb on - strand, within BWI76_RS03330 at 686.248 kb on - strand, within BWI76_RS03330 at 686.268 kb on - strand, within BWI76_RS03330 at 686.335 kb on + strand, within BWI76_RS03330 at 686.343 kb on - strand, within BWI76_RS03330 at 686.343 kb on - strand, within BWI76_RS03330 at 686.378 kb on - strand, within BWI76_RS03330 at 686.397 kb on + strand, within BWI76_RS03330 at 686.543 kb on + strand, within BWI76_RS03330 at 686.589 kb on + strand, within BWI76_RS03330 at 686.589 kb on + strand, within BWI76_RS03330 at 686.613 kb on - strand, within BWI76_RS03330 at 686.615 kb on + strand, within BWI76_RS03330 at 686.615 kb on + strand, within BWI76_RS03330 at 686.615 kb on + strand, within BWI76_RS03330 at 686.623 kb on - strand, within BWI76_RS03330 at 686.623 kb on - strand, within BWI76_RS03330 at 686.623 kb on - strand, within BWI76_RS03330 at 686.634 kb on - strand, within BWI76_RS03330 at 686.685 kb on + strand, within BWI76_RS03330 at 686.708 kb on + strand, within BWI76_RS03330 at 686.708 kb on + strand, within BWI76_RS03330 at 686.716 kb on - strand, within BWI76_RS03330 at 686.716 kb on - strand, within BWI76_RS03330 at 686.731 kb on + strand, within BWI76_RS03330 at 686.827 kb on - strand, within BWI76_RS03330 at 686.851 kb on + strand, within BWI76_RS03330 at 686.861 kb on + strand, within BWI76_RS03330 at 686.869 kb on - strand, within BWI76_RS03330 at 686.869 kb on - strand, within BWI76_RS03330 at 686.923 kb on - strand, within BWI76_RS03330 at 686.928 kb on - strand, within BWI76_RS03330 at 686.963 kb on + strand, within BWI76_RS03330 at 686.963 kb on + strand, within BWI76_RS03330 at 686.963 kb on + strand, within BWI76_RS03330 at 686.966 kb on + strand, within BWI76_RS03330 at 686.971 kb on - strand, within BWI76_RS03330 at 687.022 kb on + strand, within BWI76_RS03330 at 687.038 kb on - strand, within BWI76_RS03330 at 687.258 kb on + strand, within BWI76_RS03330 at 687.266 kb on - strand, within BWI76_RS03330 at 687.274 kb on + strand at 687.294 kb on + strand at 687.294 kb on + strand at 687.294 kb on + strand at 687.294 kb on + strand at 687.294 kb on + strand at 687.294 kb on + strand at 687.294 kb on + strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.302 kb on - strand at 687.304 kb on + strand at 687.304 kb on - strand at 687.417 kb on - strand at 687.434 kb on - strand at 687.437 kb on + strand at 687.440 kb on + strand at 687.448 kb on - strand at 687.506 kb on + strand at 687.519 kb on + strand at 687.632 kb on - strand at 687.691 kb on - strand at 687.693 kb on + strand at 687.693 kb on + strand at 687.693 kb on + strand at 687.693 kb on + strand at 687.693 kb on + strand at 687.693 kb on + strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.701 kb on - strand at 687.719 kb on + strand at 687.719 kb on + strand at 687.727 kb on - strand at 687.727 kb on - strand at 687.748 kb on - strand at 687.751 kb on + strand at 687.751 kb on + strand at 687.759 kb on - strand at 687.759 kb on - strand at 687.759 kb on - strand at 687.774 kb on + strand at 687.774 kb on + strand at 687.774 kb on + strand at 687.774 kb on + strand at 687.774 kb on + strand at 687.774 kb on + strand at 687.774 kb on + strand at 687.781 kb on + strand at 687.782 kb on - strand at 687.782 kb on - strand at 687.782 kb on - strand at 687.782 kb on - strand at 687.782 kb on - strand at 687.789 kb on - strand at 687.789 kb on - strand at 687.789 kb on - strand at 687.794 kb on + strand at 687.798 kb on + strand at 687.798 kb on + strand at 687.798 kb on + strand at 687.804 kb on + strand at 687.806 kb on - strand at 687.806 kb on - strand at 687.887 kb on + strand at 687.888 kb on + strand at 687.888 kb on + strand at 687.897 kb on + strand at 687.948 kb on - strand at 687.981 kb on - strand at 688.001 kb on + strand at 688.009 kb on - strand at 688.037 kb on - strand at 688.051 kb on - strand at 688.127 kb on + strand at 688.146 kb on + strand at 688.146 kb on + strand at 688.146 kb on + strand at 688.146 kb on + strand at 688.146 kb on + strand at 688.146 kb on + strand at 688.148 kb on - strand at 688.154 kb on - strand at 688.154 kb on - strand at 688.154 kb on - strand at 688.162 kb on + strand at 688.170 kb on - strand at 688.170 kb on - strand at 688.170 kb on - strand at 688.201 kb on + strand at 688.201 kb on + strand at 688.201 kb on + strand at 688.201 kb on + strand at 688.209 kb on - strand at 688.209 kb on - strand at 688.209 kb on - strand at 688.209 kb on - strand at 688.211 kb on + strand at 688.211 kb on + strand at 688.211 kb on + strand at 688.211 kb on + strand at 688.211 kb on + strand at 688.211 kb on + strand at 688.219 kb on - strand at 688.238 kb on - strand at 688.257 kb on + strand at 688.267 kb on + strand at 688.267 kb on + strand at 688.275 kb on - strand at 688.275 kb on - strand at 688.275 kb on - strand at 688.284 kb on + strand at 688.285 kb on - strand at 688.297 kb on + strand at 688.297 kb on + strand at 688.297 kb on + strand at 688.297 kb on + strand at 688.297 kb on + strand at 688.297 kb on + strand at 688.300 kb on - strand at 688.300 kb on - strand at 688.305 kb on - strand at 688.305 kb on - strand at 688.314 kb on + strand at 688.315 kb on - strand at 688.322 kb on + strand at 688.324 kb on + strand at 688.324 kb on + strand at 688.330 kb on - strand at 688.370 kb on + strand, within BWI76_RS03335 at 688.373 kb on - strand, within BWI76_RS03335 at 688.373 kb on - strand, within BWI76_RS03335 at 688.378 kb on - strand, within BWI76_RS03335
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 685,161 - -0.1 685,170 + +1.0 685,178 - -0.2 685,187 + +1.8 685,222 + -0.4 685,225 + +0.6 685,225 + -0.6 685,232 + +0.1 685,233 - +0.3 685,233 - +1.9 685,243 + -0.0 685,243 - -0.0 685,249 - -0.2 685,289 + +0.3 685,305 + BWI76_RS03325 0.10 +0.4 685,305 + BWI76_RS03325 0.10 -0.5 685,305 + BWI76_RS03325 0.10 +0.3 685,313 - BWI76_RS03325 0.11 +0.8 685,320 + +0.3 685,336 - BWI76_RS03325 0.14 -0.6 685,354 + BWI76_RS03325 0.16 -0.3 685,363 + BWI76_RS03325 0.17 +0.2 685,371 - BWI76_RS03325 0.18 -0.8 685,371 - BWI76_RS03325 0.18 +0.3 685,373 + BWI76_RS03325 0.18 -0.4 685,420 + BWI76_RS03325 0.23 -0.4 685,430 + BWI76_RS03325 0.24 +1.2 685,430 + BWI76_RS03325 0.24 -1.2 685,438 - BWI76_RS03325 0.25 -0.7 685,465 + BWI76_RS03325 0.28 +1.6 685,472 + BWI76_RS03325 0.29 -0.6 685,481 + BWI76_RS03325 0.30 +0.5 685,488 + BWI76_RS03325 0.31 -1.1 685,489 - BWI76_RS03325 0.31 -0.6 685,489 - BWI76_RS03325 0.31 +0.2 685,586 + BWI76_RS03325 0.42 -0.8 685,690 + BWI76_RS03325 0.53 -1.0 685,952 + BWI76_RS03325 0.83 +0.3 685,952 + BWI76_RS03325 0.83 +0.2 685,952 + BWI76_RS03325 0.83 +0.5 685,960 - BWI76_RS03325 0.84 -0.5 685,960 - BWI76_RS03325 0.84 +0.5 685,960 - BWI76_RS03325 0.84 +0.1 685,960 - BWI76_RS03325 0.84 -1.7 686,116 - +0.1 686,118 + -0.9 686,118 + +1.1 686,118 + +1.9 686,126 - -0.3 686,147 + +0.9 686,175 + +0.1 686,248 - BWI76_RS03330 0.11 +0.2 686,248 - BWI76_RS03330 0.11 -0.4 686,268 - BWI76_RS03330 0.13 +0.0 686,335 + BWI76_RS03330 0.18 +0.7 686,343 - BWI76_RS03330 0.18 -0.2 686,343 - BWI76_RS03330 0.18 +0.9 686,378 - BWI76_RS03330 0.21 +1.6 686,397 + BWI76_RS03330 0.23 +0.0 686,543 + BWI76_RS03330 0.34 -0.0 686,589 + BWI76_RS03330 0.38 -0.2 686,589 + BWI76_RS03330 0.38 +0.2 686,613 - BWI76_RS03330 0.39 +0.2 686,615 + BWI76_RS03330 0.40 +0.5 686,615 + BWI76_RS03330 0.40 +0.8 686,615 + BWI76_RS03330 0.40 -0.3 686,623 - BWI76_RS03330 0.40 +0.2 686,623 - BWI76_RS03330 0.40 +1.2 686,623 - BWI76_RS03330 0.40 +0.1 686,634 - BWI76_RS03330 0.41 -1.0 686,685 + BWI76_RS03330 0.45 -0.2 686,708 + BWI76_RS03330 0.47 +0.1 686,708 + BWI76_RS03330 0.47 +0.9 686,716 - BWI76_RS03330 0.47 +0.3 686,716 - BWI76_RS03330 0.47 -0.1 686,731 + BWI76_RS03330 0.48 -1.7 686,827 - BWI76_RS03330 0.56 +1.0 686,851 + BWI76_RS03330 0.58 +2.3 686,861 + BWI76_RS03330 0.59 +0.2 686,869 - BWI76_RS03330 0.59 +0.1 686,869 - BWI76_RS03330 0.59 +0.4 686,923 - BWI76_RS03330 0.63 -1.0 686,928 - BWI76_RS03330 0.64 -1.0 686,963 + BWI76_RS03330 0.66 +0.1 686,963 + BWI76_RS03330 0.66 -0.1 686,963 + BWI76_RS03330 0.66 -0.6 686,966 + BWI76_RS03330 0.67 +1.9 686,971 - BWI76_RS03330 0.67 -0.2 687,022 + BWI76_RS03330 0.71 +0.2 687,038 - BWI76_RS03330 0.72 +0.1 687,258 + BWI76_RS03330 0.89 +1.2 687,266 - BWI76_RS03330 0.90 +0.3 687,274 + +0.2 687,294 + +0.9 687,294 + -3.0 687,294 + +0.3 687,294 + +0.0 687,294 + +0.0 687,294 + +1.6 687,294 + +0.3 687,302 - -0.1 687,302 - -0.4 687,302 - -0.3 687,302 - +0.4 687,302 - +0.2 687,302 - +0.6 687,302 - -0.9 687,302 - -2.3 687,302 - -0.1 687,302 - +0.4 687,302 - +0.4 687,302 - -0.5 687,302 - -0.3 687,302 - -0.1 687,304 + +0.0 687,304 - +0.3 687,417 - -0.3 687,434 - -0.3 687,437 + -0.7 687,440 + +0.1 687,448 - +0.6 687,506 + +1.4 687,519 + +0.6 687,632 - +0.1 687,691 - -1.0 687,693 + -0.0 687,693 + -0.4 687,693 + -0.5 687,693 + +0.2 687,693 + +0.3 687,693 + +0.4 687,701 - +0.2 687,701 - -0.5 687,701 - -0.3 687,701 - -0.5 687,701 - +0.0 687,701 - +1.4 687,701 - +0.5 687,701 - -1.4 687,719 + -0.3 687,719 + +0.2 687,727 - +0.4 687,727 - +1.0 687,748 - +0.4 687,751 + -0.2 687,751 + -0.5 687,759 - +0.8 687,759 - +0.5 687,759 - -0.2 687,774 + +0.2 687,774 + +1.5 687,774 + +0.5 687,774 + -0.8 687,774 + +0.2 687,774 + -1.3 687,774 + +1.1 687,781 + -2.2 687,782 - -0.4 687,782 - -0.1 687,782 - +0.4 687,782 - +0.2 687,782 - -1.5 687,789 - -2.6 687,789 - +1.4 687,789 - -0.2 687,794 + +0.1 687,798 + +0.2 687,798 + -0.3 687,798 + +0.1 687,804 + -0.9 687,806 - +0.0 687,806 - -0.7 687,887 + +0.1 687,888 + -0.4 687,888 + +0.8 687,897 + +0.1 687,948 - +1.1 687,981 - +1.2 688,001 + +0.2 688,009 - -1.0 688,037 - -0.6 688,051 - -0.7 688,127 + +0.3 688,146 + +0.3 688,146 + -0.4 688,146 + -0.0 688,146 + +0.2 688,146 + +1.3 688,146 + +0.7 688,148 - +0.6 688,154 - -0.8 688,154 - +0.2 688,154 - +1.0 688,162 + -0.7 688,170 - +0.6 688,170 - +0.3 688,170 - -0.2 688,201 + -0.4 688,201 + +0.4 688,201 + -0.6 688,201 + -1.1 688,209 - -0.3 688,209 - +0.6 688,209 - +0.9 688,209 - +0.3 688,211 + -0.6 688,211 + +1.5 688,211 + +0.7 688,211 + -1.0 688,211 + -0.3 688,211 + -2.0 688,219 - +0.7 688,238 - -0.2 688,257 + -2.0 688,267 + +1.4 688,267 + +2.0 688,275 - +0.3 688,275 - +0.0 688,275 - +1.9 688,284 + +0.9 688,285 - +0.3 688,297 + +0.7 688,297 + -1.0 688,297 + +1.0 688,297 + +0.5 688,297 + +1.2 688,297 + -0.6 688,300 - +0.5 688,300 - +0.1 688,305 - +1.4 688,305 - -0.3 688,314 + +0.1 688,315 - +1.1 688,322 + +0.2 688,324 + -0.1 688,324 + -2.0 688,330 - +1.2 688,370 + BWI76_RS03335 0.16 +0.7 688,373 - BWI76_RS03335 0.17 -0.2 688,373 - BWI76_RS03335 0.17 +1.0 688,378 - BWI76_RS03335 0.19 +0.2
Or see this region's nucleotide sequence