Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02655 and BWI76_RS02660 are separated by 337 nucleotides BWI76_RS02660 and BWI76_RS02665 are separated by 5 nucleotides BWI76_RS02665 and BWI76_RS02670 are separated by 4 nucleotides BWI76_RS02670 and BWI76_RS02675 are separated by 41 nucleotides BWI76_RS02675 and BWI76_RS02680 are separated by 146 nucleotides
BWI76_RS02655: BWI76_RS02655 - hypothetical protein, at 541,860 to 542,135
_RS02655
BWI76_RS02660: BWI76_RS02660 - 30S ribosomal protein S6, at 542,473 to 542,868
_RS02660
BWI76_RS02665: BWI76_RS02665 - primosomal replication protein N, at 542,874 to 543,188
_RS02665
BWI76_RS02670: BWI76_RS02670 - 30S ribosomal protein S18, at 543,193 to 543,420
_RS02670
BWI76_RS02675: BWI76_RS02675 - 50S ribosomal protein L9, at 543,462 to 543,911
_RS02675
BWI76_RS02680: BWI76_RS02680 - EamA family transporter, at 544,058 to 545,011
_RS02680
Position (kb) 542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 541.874 kb on - strand at 541.940 kb on - strand, within BWI76_RS02655 at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.164 kb on - strand at 542.193 kb on + strand at 543.723 kb on + strand, within BWI76_RS02675 at 544.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 541,874 - -1.2 541,940 - BWI76_RS02655 0.29 -0.1 542,146 + +0.2 542,146 + -0.8 542,146 + -0.1 542,146 + -0.0 542,154 - +0.1 542,154 - +0.6 542,154 - -0.3 542,154 - -0.5 542,164 - +1.0 542,193 + +0.1 543,723 + BWI76_RS02675 0.58 -3.1 544,109 + +1.5
Or see this region's nucleotide sequence