Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01910 and BWI76_RS01915 are separated by 61 nucleotides BWI76_RS01915 and BWI76_RS01920 are separated by 145 nucleotides
BWI76_RS01910: BWI76_RS01910 - quinone oxidoreductase, at 388,396 to 389,379
_RS01910
BWI76_RS01915: BWI76_RS01915 - replicative DNA helicase, at 389,441 to 390,856
_RS01915
BWI76_RS01920: BWI76_RS01920 - alanine racemase, at 391,002 to 392,081
_RS01920
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.677 kb on - strand, within BWI76_RS01910 at 388.735 kb on + strand, within BWI76_RS01910 at 388.795 kb on - strand, within BWI76_RS01910 at 388.859 kb on + strand, within BWI76_RS01910 at 388.905 kb on + strand, within BWI76_RS01910 at 388.917 kb on + strand, within BWI76_RS01910 at 388.925 kb on - strand, within BWI76_RS01910 at 388.988 kb on + strand, within BWI76_RS01910 at 388.997 kb on + strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 389.098 kb on - strand, within BWI76_RS01910 at 389.107 kb on - strand, within BWI76_RS01910 at 389.132 kb on - strand, within BWI76_RS01910 at 389.246 kb on - strand, within BWI76_RS01910 at 389.278 kb on - strand, within BWI76_RS01910 at 389.278 kb on - strand, within BWI76_RS01910 at 389.327 kb on - strand at 389.383 kb on - strand at 390.894 kb on + strand at 390.897 kb on - strand at 391.119 kb on - strand, within BWI76_RS01920 at 391.131 kb on - strand, within BWI76_RS01920 at 391.148 kb on + strand, within BWI76_RS01920 at 391.156 kb on - strand, within BWI76_RS01920 at 391.188 kb on + strand, within BWI76_RS01920 at 391.301 kb on - strand, within BWI76_RS01920 at 391.301 kb on - strand, within BWI76_RS01920 at 391.417 kb on + strand, within BWI76_RS01920 at 391.429 kb on + strand, within BWI76_RS01920 at 391.439 kb on + strand, within BWI76_RS01920 at 391.439 kb on + strand, within BWI76_RS01920 at 391.447 kb on - strand, within BWI76_RS01920 at 391.555 kb on + strand, within BWI76_RS01920 at 391.590 kb on + strand, within BWI76_RS01920 at 391.830 kb on + strand, within BWI76_RS01920
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 388,677 - BWI76_RS01910 0.29 -0.5 388,735 + BWI76_RS01910 0.34 -2.2 388,795 - BWI76_RS01910 0.41 +2.3 388,859 + BWI76_RS01910 0.47 -0.6 388,905 + BWI76_RS01910 0.52 -0.8 388,917 + BWI76_RS01910 0.53 -0.5 388,925 - BWI76_RS01910 0.54 -0.2 388,988 + BWI76_RS01910 0.60 +0.7 388,997 + BWI76_RS01910 0.61 -0.2 388,998 - BWI76_RS01910 0.61 -0.8 388,998 - BWI76_RS01910 0.61 -0.1 389,098 - BWI76_RS01910 0.71 +0.0 389,107 - BWI76_RS01910 0.72 -0.3 389,132 - BWI76_RS01910 0.75 -1.3 389,246 - BWI76_RS01910 0.86 -0.9 389,278 - BWI76_RS01910 0.90 -0.1 389,278 - BWI76_RS01910 0.90 -1.5 389,327 - -0.4 389,383 - -0.4 390,894 + +0.1 390,897 - +0.2 391,119 - BWI76_RS01920 0.11 -1.0 391,131 - BWI76_RS01920 0.12 -0.2 391,148 + BWI76_RS01920 0.14 -0.5 391,156 - BWI76_RS01920 0.14 +0.1 391,188 + BWI76_RS01920 0.17 +0.3 391,301 - BWI76_RS01920 0.28 +0.8 391,301 - BWI76_RS01920 0.28 -0.5 391,417 + BWI76_RS01920 0.38 -0.2 391,429 + BWI76_RS01920 0.40 +0.4 391,439 + BWI76_RS01920 0.40 -0.1 391,439 + BWI76_RS01920 0.40 +1.2 391,447 - BWI76_RS01920 0.41 +0.9 391,555 + BWI76_RS01920 0.51 +0.2 391,590 + BWI76_RS01920 0.54 +1.9 391,830 + BWI76_RS01920 0.77 -0.7
Or see this region's nucleotide sequence