Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25445 and BWI76_RS25450 are separated by 5 nucleotides BWI76_RS25450 and BWI76_RS25455 are separated by 7 nucleotides BWI76_RS25455 and BWI76_RS25460 are separated by 131 nucleotides
BWI76_RS25445: BWI76_RS25445 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 5,286,509 to 5,288,476
_RS25445
BWI76_RS25450: BWI76_RS25450 - p-hydroxybenzoic acid efflux subunit AaeA, at 5,288,482 to 5,289,414
_RS25450
BWI76_RS25455: BWI76_RS25455 - protein AaeX, at 5,289,422 to 5,289,625
_RS25455
BWI76_RS25460: BWI76_RS25460 - transcriptional regulator, at 5,289,757 to 5,290,686
_RS25460
Position (kb) 5288
5289
5290 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5287.579 kb on + strand, within BWI76_RS25445 at 5287.646 kb on - strand, within BWI76_RS25445 at 5287.693 kb on + strand, within BWI76_RS25445 at 5287.862 kb on - strand, within BWI76_RS25445 at 5287.921 kb on - strand, within BWI76_RS25445 at 5288.159 kb on + strand, within BWI76_RS25445 at 5288.298 kb on + strand at 5288.519 kb on - strand at 5288.576 kb on - strand, within BWI76_RS25450 at 5288.596 kb on - strand, within BWI76_RS25450 at 5288.607 kb on - strand, within BWI76_RS25450 at 5288.624 kb on + strand, within BWI76_RS25450 at 5288.734 kb on - strand, within BWI76_RS25450 at 5288.804 kb on + strand, within BWI76_RS25450 at 5288.828 kb on - strand, within BWI76_RS25450 at 5289.471 kb on + strand, within BWI76_RS25455 at 5289.471 kb on + strand, within BWI76_RS25455 at 5289.471 kb on + strand, within BWI76_RS25455 at 5289.479 kb on - strand, within BWI76_RS25455 at 5289.479 kb on - strand, within BWI76_RS25455 at 5289.479 kb on - strand, within BWI76_RS25455 at 5289.479 kb on - strand, within BWI76_RS25455 at 5289.479 kb on - strand, within BWI76_RS25455 at 5289.479 kb on - strand, within BWI76_RS25455 at 5289.489 kb on - strand, within BWI76_RS25455 at 5289.623 kb on + strand at 5289.920 kb on + strand, within BWI76_RS25460 at 5289.928 kb on - strand, within BWI76_RS25460 at 5289.952 kb on + strand, within BWI76_RS25460 at 5290.002 kb on + strand, within BWI76_RS25460 at 5290.009 kb on - strand, within BWI76_RS25460 at 5290.109 kb on + strand, within BWI76_RS25460 at 5290.168 kb on + strand, within BWI76_RS25460 at 5290.169 kb on + strand, within BWI76_RS25460 at 5290.396 kb on + strand, within BWI76_RS25460 at 5290.396 kb on - strand, within BWI76_RS25460 at 5290.404 kb on - strand, within BWI76_RS25460
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,287,579 + BWI76_RS25445 0.54 -0.4 5,287,646 - BWI76_RS25445 0.58 -1.9 5,287,693 + BWI76_RS25445 0.60 -0.4 5,287,862 - BWI76_RS25445 0.69 -0.1 5,287,921 - BWI76_RS25445 0.72 -0.6 5,288,159 + BWI76_RS25445 0.84 -0.1 5,288,298 + +1.3 5,288,519 - -0.6 5,288,576 - BWI76_RS25450 0.10 +0.1 5,288,596 - BWI76_RS25450 0.12 +0.1 5,288,607 - BWI76_RS25450 0.13 +1.3 5,288,624 + BWI76_RS25450 0.15 +1.7 5,288,734 - BWI76_RS25450 0.27 +0.4 5,288,804 + BWI76_RS25450 0.35 -1.1 5,288,828 - BWI76_RS25450 0.37 +4.1 5,289,471 + BWI76_RS25455 0.24 -1.9 5,289,471 + BWI76_RS25455 0.24 -0.4 5,289,471 + BWI76_RS25455 0.24 +0.2 5,289,479 - BWI76_RS25455 0.28 -0.7 5,289,479 - BWI76_RS25455 0.28 +0.3 5,289,479 - BWI76_RS25455 0.28 -1.2 5,289,479 - BWI76_RS25455 0.28 -0.1 5,289,479 - BWI76_RS25455 0.28 +0.2 5,289,479 - BWI76_RS25455 0.28 -0.1 5,289,489 - BWI76_RS25455 0.33 +0.7 5,289,623 + -2.2 5,289,920 + BWI76_RS25460 0.18 +0.0 5,289,928 - BWI76_RS25460 0.18 +0.7 5,289,952 + BWI76_RS25460 0.21 -0.2 5,290,002 + BWI76_RS25460 0.26 -0.7 5,290,009 - BWI76_RS25460 0.27 +0.2 5,290,109 + BWI76_RS25460 0.38 -0.1 5,290,168 + BWI76_RS25460 0.44 -0.4 5,290,169 + BWI76_RS25460 0.44 -0.8 5,290,396 + BWI76_RS25460 0.69 -1.1 5,290,396 - BWI76_RS25460 0.69 +0.4 5,290,404 - BWI76_RS25460 0.70 +0.4
Or see this region's nucleotide sequence