Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24125 and BWI76_RS24130 are separated by 46 nucleotides BWI76_RS24130 and BWI76_RS24135 overlap by 1 nucleotides BWI76_RS24135 and BWI76_RS24140 are separated by 48 nucleotides BWI76_RS24140 and BWI76_RS24145 are separated by 50 nucleotides
BWI76_RS24125: BWI76_RS24125 - hypothetical protein, at 5,031,101 to 5,032,087
_RS24125
BWI76_RS24130: BWI76_RS24130 - small integral C4-dicarboxylate membrane transporter, at 5,032,134 to 5,032,637
_RS24130
BWI76_RS24135: BWI76_RS24135 - c4-dicarboxylate permease, at 5,032,637 to 5,033,938
_RS24135
BWI76_RS24140: BWI76_RS24140 - hypothetical protein, at 5,033,987 to 5,034,706
_RS24140
BWI76_RS24145: BWI76_RS24145 - hypothetical protein, at 5,034,757 to 5,035,083
_RS24145
Position (kb) 5032
5033
5034 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5031.641 kb on - strand at 5031.641 kb on - strand, within BWI76_RS24125 at 5031.641 kb on - strand, within BWI76_RS24125 at 5031.651 kb on - strand, within BWI76_RS24125 at 5031.696 kb on - strand, within BWI76_RS24125 at 5031.713 kb on + strand, within BWI76_RS24125 at 5031.779 kb on - strand, within BWI76_RS24125 at 5031.852 kb on + strand, within BWI76_RS24125 at 5031.949 kb on + strand, within BWI76_RS24125 at 5032.082 kb on + strand at 5032.203 kb on + strand, within BWI76_RS24130 at 5032.395 kb on - strand, within BWI76_RS24130 at 5032.395 kb on - strand, within BWI76_RS24130 at 5032.451 kb on - strand, within BWI76_RS24130 at 5032.467 kb on - strand, within BWI76_RS24130 at 5032.504 kb on - strand, within BWI76_RS24130 at 5032.526 kb on - strand, within BWI76_RS24130 at 5032.541 kb on - strand, within BWI76_RS24130 at 5032.644 kb on + strand at 5032.734 kb on + strand at 5032.898 kb on - strand, within BWI76_RS24135 at 5032.900 kb on + strand, within BWI76_RS24135 at 5032.900 kb on + strand, within BWI76_RS24135 at 5032.908 kb on - strand, within BWI76_RS24135 at 5032.908 kb on - strand, within BWI76_RS24135 at 5032.977 kb on - strand, within BWI76_RS24135 at 5033.093 kb on - strand, within BWI76_RS24135 at 5033.172 kb on - strand, within BWI76_RS24135 at 5033.606 kb on - strand, within BWI76_RS24135 at 5033.608 kb on + strand, within BWI76_RS24135 at 5033.706 kb on - strand, within BWI76_RS24135 at 5033.746 kb on + strand, within BWI76_RS24135 at 5033.875 kb on + strand at 5033.953 kb on - strand at 5034.022 kb on + strand at 5034.022 kb on + strand at 5034.030 kb on - strand at 5034.030 kb on - strand at 5034.272 kb on - strand, within BWI76_RS24140 at 5034.306 kb on - strand, within BWI76_RS24140 at 5034.306 kb on - strand, within BWI76_RS24140 at 5034.467 kb on - strand, within BWI76_RS24140 at 5034.515 kb on + strand, within BWI76_RS24140 at 5034.631 kb on + strand, within BWI76_RS24140 at 5034.849 kb on - strand, within BWI76_RS24145
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,031,641 - -1.1 5,031,641 - BWI76_RS24125 0.55 +0.9 5,031,641 - BWI76_RS24125 0.55 -0.4 5,031,651 - BWI76_RS24125 0.56 -0.8 5,031,696 - BWI76_RS24125 0.60 +0.4 5,031,713 + BWI76_RS24125 0.62 -0.2 5,031,779 - BWI76_RS24125 0.69 +0.6 5,031,852 + BWI76_RS24125 0.76 +1.2 5,031,949 + BWI76_RS24125 0.86 -2.0 5,032,082 + -1.6 5,032,203 + BWI76_RS24130 0.14 +0.2 5,032,395 - BWI76_RS24130 0.52 +1.1 5,032,395 - BWI76_RS24130 0.52 +0.8 5,032,451 - BWI76_RS24130 0.63 -0.5 5,032,467 - BWI76_RS24130 0.66 +1.2 5,032,504 - BWI76_RS24130 0.73 -0.2 5,032,526 - BWI76_RS24130 0.78 +0.7 5,032,541 - BWI76_RS24130 0.81 +0.9 5,032,644 + -1.4 5,032,734 + +0.1 5,032,898 - BWI76_RS24135 0.20 -1.9 5,032,900 + BWI76_RS24135 0.20 -1.0 5,032,900 + BWI76_RS24135 0.20 +0.2 5,032,908 - BWI76_RS24135 0.21 +0.3 5,032,908 - BWI76_RS24135 0.21 +0.4 5,032,977 - BWI76_RS24135 0.26 -0.1 5,033,093 - BWI76_RS24135 0.35 -0.9 5,033,172 - BWI76_RS24135 0.41 -0.2 5,033,606 - BWI76_RS24135 0.74 +1.5 5,033,608 + BWI76_RS24135 0.75 +0.2 5,033,706 - BWI76_RS24135 0.82 -0.3 5,033,746 + BWI76_RS24135 0.85 -0.3 5,033,875 + -0.3 5,033,953 - +1.3 5,034,022 + -0.6 5,034,022 + +0.2 5,034,030 - +0.4 5,034,030 - +1.7 5,034,272 - BWI76_RS24140 0.40 +1.6 5,034,306 - BWI76_RS24140 0.44 -0.8 5,034,306 - BWI76_RS24140 0.44 -0.7 5,034,467 - BWI76_RS24140 0.67 +2.5 5,034,515 + BWI76_RS24140 0.73 -0.7 5,034,631 + BWI76_RS24140 0.89 -0.3 5,034,849 - BWI76_RS24145 0.28 -0.9
Or see this region's nucleotide sequence