Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24130

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24125 and BWI76_RS24130 are separated by 46 nucleotidesBWI76_RS24130 and BWI76_RS24135 overlap by 1 nucleotides BWI76_RS24125: BWI76_RS24125 - hypothetical protein, at 5,031,101 to 5,032,087 _RS24125 BWI76_RS24130: BWI76_RS24130 - small integral C4-dicarboxylate membrane transporter, at 5,032,134 to 5,032,637 _RS24130 BWI76_RS24135: BWI76_RS24135 - c4-dicarboxylate permease, at 5,032,637 to 5,033,938 _RS24135 Position (kb) 5032 5033Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5031.159 kb on + strandat 5031.203 kb on + strand, within BWI76_RS24125at 5031.207 kb on + strand, within BWI76_RS24125at 5031.237 kb on + strandat 5031.317 kb on - strand, within BWI76_RS24125at 5031.332 kb on + strandat 5031.332 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.361 kb on + strand, within BWI76_RS24125at 5031.367 kb on + strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.369 kb on - strand, within BWI76_RS24125at 5031.374 kb on + strand, within BWI76_RS24125at 5031.375 kb on - strand, within BWI76_RS24125at 5031.375 kb on - strand, within BWI76_RS24125at 5031.394 kb on - strand, within BWI76_RS24125at 5031.399 kb on - strand, within BWI76_RS24125at 5031.406 kb on + strand, within BWI76_RS24125at 5031.406 kb on + strand, within BWI76_RS24125at 5031.414 kb on - strand, within BWI76_RS24125at 5031.414 kb on - strand, within BWI76_RS24125at 5031.414 kb on - strand, within BWI76_RS24125at 5031.416 kb on + strand, within BWI76_RS24125at 5031.508 kb on + strand, within BWI76_RS24125at 5031.509 kb on + strand, within BWI76_RS24125at 5031.517 kb on - strand, within BWI76_RS24125at 5031.517 kb on - strand, within BWI76_RS24125at 5031.519 kb on + strand, within BWI76_RS24125at 5031.519 kb on + strand, within BWI76_RS24125at 5031.519 kb on + strand, within BWI76_RS24125at 5031.527 kb on - strand, within BWI76_RS24125at 5031.527 kb on - strand, within BWI76_RS24125at 5031.531 kb on + strand, within BWI76_RS24125at 5031.531 kb on + strand, within BWI76_RS24125at 5031.539 kb on - strand, within BWI76_RS24125at 5031.539 kb on - strand, within BWI76_RS24125at 5031.539 kb on - strand, within BWI76_RS24125at 5031.542 kb on + strand, within BWI76_RS24125at 5031.548 kb on + strand, within BWI76_RS24125at 5031.599 kb on + strand, within BWI76_RS24125at 5031.600 kb on + strand, within BWI76_RS24125at 5031.614 kb on + strand, within BWI76_RS24125at 5031.619 kb on + strand, within BWI76_RS24125at 5031.619 kb on + strand, within BWI76_RS24125at 5031.622 kb on - strand, within BWI76_RS24125at 5031.622 kb on - strand, within BWI76_RS24125at 5031.641 kb on - strandat 5031.641 kb on - strand, within BWI76_RS24125at 5031.641 kb on - strand, within BWI76_RS24125at 5031.651 kb on - strand, within BWI76_RS24125at 5031.696 kb on - strand, within BWI76_RS24125at 5031.713 kb on + strand, within BWI76_RS24125at 5031.779 kb on - strand, within BWI76_RS24125at 5031.852 kb on + strand, within BWI76_RS24125at 5031.949 kb on + strand, within BWI76_RS24125at 5032.082 kb on + strandat 5032.203 kb on + strand, within BWI76_RS24130at 5032.395 kb on - strand, within BWI76_RS24130at 5032.395 kb on - strand, within BWI76_RS24130at 5032.451 kb on - strand, within BWI76_RS24130at 5032.467 kb on - strand, within BWI76_RS24130at 5032.504 kb on - strand, within BWI76_RS24130at 5032.526 kb on - strand, within BWI76_RS24130at 5032.541 kb on - strand, within BWI76_RS24130at 5032.644 kb on + strandat 5032.734 kb on + strandat 5032.898 kb on - strand, within BWI76_RS24135at 5032.900 kb on + strand, within BWI76_RS24135at 5032.900 kb on + strand, within BWI76_RS24135at 5032.908 kb on - strand, within BWI76_RS24135at 5032.908 kb on - strand, within BWI76_RS24135at 5032.977 kb on - strand, within BWI76_RS24135at 5033.093 kb on - strand, within BWI76_RS24135at 5033.172 kb on - strand, within BWI76_RS24135at 5033.606 kb on - strand, within BWI76_RS24135at 5033.608 kb on + strand, within BWI76_RS24135

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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5,031,159 + +0.5
5,031,203 + BWI76_RS24125 0.10 +1.0
5,031,207 + BWI76_RS24125 0.11 +0.3
5,031,237 + +1.9
5,031,317 - BWI76_RS24125 0.22 -0.5
5,031,332 + +0.9
5,031,332 + BWI76_RS24125 0.23 -0.8
5,031,361 + BWI76_RS24125 0.26 -0.0
5,031,361 + BWI76_RS24125 0.26 -0.3
5,031,361 + BWI76_RS24125 0.26 -1.8
5,031,361 + BWI76_RS24125 0.26 -0.8
5,031,361 + BWI76_RS24125 0.26 -0.8
5,031,361 + BWI76_RS24125 0.26 -1.1
5,031,361 + BWI76_RS24125 0.26 -0.4
5,031,361 + BWI76_RS24125 0.26 +0.1
5,031,361 + BWI76_RS24125 0.26 +1.1
5,031,361 + BWI76_RS24125 0.26 +0.9
5,031,361 + BWI76_RS24125 0.26 -0.4
5,031,361 + BWI76_RS24125 0.26 +0.8
5,031,361 + BWI76_RS24125 0.26 -0.5
5,031,367 + BWI76_RS24125 0.27 +0.7
5,031,369 - BWI76_RS24125 0.27 -2.1
5,031,369 - BWI76_RS24125 0.27 +0.3
5,031,369 - BWI76_RS24125 0.27 +1.0
5,031,369 - BWI76_RS24125 0.27 +3.5
5,031,369 - BWI76_RS24125 0.27 +2.1
5,031,369 - BWI76_RS24125 0.27 -1.4
5,031,369 - BWI76_RS24125 0.27 +0.5
5,031,369 - BWI76_RS24125 0.27 +1.3
5,031,369 - BWI76_RS24125 0.27 +2.5
5,031,369 - BWI76_RS24125 0.27 -0.3
5,031,369 - BWI76_RS24125 0.27 -0.5
5,031,369 - BWI76_RS24125 0.27 +0.5
5,031,369 - BWI76_RS24125 0.27 +0.4
5,031,369 - BWI76_RS24125 0.27 +0.6
5,031,369 - BWI76_RS24125 0.27 -0.6
5,031,369 - BWI76_RS24125 0.27 +0.4
5,031,369 - BWI76_RS24125 0.27 -0.4
5,031,374 + BWI76_RS24125 0.28 -0.6
5,031,375 - BWI76_RS24125 0.28 +1.5
5,031,375 - BWI76_RS24125 0.28 +0.9
5,031,394 - BWI76_RS24125 0.30 +0.6
5,031,399 - BWI76_RS24125 0.30 -1.4
5,031,406 + BWI76_RS24125 0.31 +0.2
5,031,406 + BWI76_RS24125 0.31 -0.8
5,031,414 - BWI76_RS24125 0.32 -0.1
5,031,414 - BWI76_RS24125 0.32 +0.3
5,031,414 - BWI76_RS24125 0.32 -0.0
5,031,416 + BWI76_RS24125 0.32 -1.6
5,031,508 + BWI76_RS24125 0.41 -0.1
5,031,509 + BWI76_RS24125 0.41 -1.8
5,031,517 - BWI76_RS24125 0.42 +2.3
5,031,517 - BWI76_RS24125 0.42 +1.3
5,031,519 + BWI76_RS24125 0.42 -0.3
5,031,519 + BWI76_RS24125 0.42 +0.2
5,031,519 + BWI76_RS24125 0.42 +1.6
5,031,527 - BWI76_RS24125 0.43 -0.3
5,031,527 - BWI76_RS24125 0.43 +0.2
5,031,531 + BWI76_RS24125 0.44 +0.0
5,031,531 + BWI76_RS24125 0.44 +0.9
5,031,539 - BWI76_RS24125 0.44 +1.5
5,031,539 - BWI76_RS24125 0.44 +1.5
5,031,539 - BWI76_RS24125 0.44 -0.1
5,031,542 + BWI76_RS24125 0.45 -0.3
5,031,548 + BWI76_RS24125 0.45 +0.9
5,031,599 + BWI76_RS24125 0.50 +0.3
5,031,600 + BWI76_RS24125 0.51 +0.3
5,031,614 + BWI76_RS24125 0.52 -1.3
5,031,619 + BWI76_RS24125 0.52 -0.7
5,031,619 + BWI76_RS24125 0.52 -0.3
5,031,622 - BWI76_RS24125 0.53 -0.2
5,031,622 - BWI76_RS24125 0.53 -0.3
5,031,641 - -1.1
5,031,641 - BWI76_RS24125 0.55 +0.9
5,031,641 - BWI76_RS24125 0.55 -0.4
5,031,651 - BWI76_RS24125 0.56 -0.8
5,031,696 - BWI76_RS24125 0.60 +0.4
5,031,713 + BWI76_RS24125 0.62 -0.2
5,031,779 - BWI76_RS24125 0.69 +0.6
5,031,852 + BWI76_RS24125 0.76 +1.2
5,031,949 + BWI76_RS24125 0.86 -2.0
5,032,082 + -1.6
5,032,203 + BWI76_RS24130 0.14 +0.2
5,032,395 - BWI76_RS24130 0.52 +1.1
5,032,395 - BWI76_RS24130 0.52 +0.8
5,032,451 - BWI76_RS24130 0.63 -0.5
5,032,467 - BWI76_RS24130 0.66 +1.2
5,032,504 - BWI76_RS24130 0.73 -0.2
5,032,526 - BWI76_RS24130 0.78 +0.7
5,032,541 - BWI76_RS24130 0.81 +0.9
5,032,644 + -1.4
5,032,734 + +0.1
5,032,898 - BWI76_RS24135 0.20 -1.9
5,032,900 + BWI76_RS24135 0.20 -1.0
5,032,900 + BWI76_RS24135 0.20 +0.2
5,032,908 - BWI76_RS24135 0.21 +0.3
5,032,908 - BWI76_RS24135 0.21 +0.4
5,032,977 - BWI76_RS24135 0.26 -0.1
5,033,093 - BWI76_RS24135 0.35 -0.9
5,033,172 - BWI76_RS24135 0.41 -0.2
5,033,606 - BWI76_RS24135 0.74 +1.5
5,033,608 + BWI76_RS24135 0.75 +0.2

Or see this region's nucleotide sequence