Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23270 and BWI76_RS23275 are separated by 12 nucleotides BWI76_RS23275 and BWI76_RS23280 are separated by 39 nucleotides BWI76_RS23280 and BWI76_RS23285 are separated by 219 nucleotides BWI76_RS23285 and BWI76_RS23290 are separated by 16 nucleotides
BWI76_RS23270: BWI76_RS23270 - phosphoenolpyruvate--protein phosphotransferase PtsP, at 4,854,084 to 4,856,330
_RS23270
BWI76_RS23275: BWI76_RS23275 - RNA pyrophosphohydrolase, at 4,856,343 to 4,856,873
_RS23275
BWI76_RS23280: BWI76_RS23280 - hypothetical protein, at 4,856,913 to 4,857,095
_RS23280
BWI76_RS23285: BWI76_RS23285 - hypothetical protein, at 4,857,315 to 4,857,539
_RS23285
BWI76_RS23290: BWI76_RS23290 - DNA mismatch repair protein MutH, at 4,857,556 to 4,858,248
_RS23290
Position (kb) 4856
4857
4858 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4855.935 kb on - strand, within BWI76_RS23270 at 4856.079 kb on - strand, within BWI76_RS23270 at 4856.334 kb on - strand at 4856.389 kb on - strand at 4856.929 kb on + strand at 4856.995 kb on + strand, within BWI76_RS23280 at 4857.274 kb on - strand at 4857.369 kb on + strand, within BWI76_RS23285 at 4857.584 kb on - strand at 4857.656 kb on + strand, within BWI76_RS23290 at 4857.840 kb on - strand, within BWI76_RS23290 at 4857.853 kb on + strand, within BWI76_RS23290 at 4857.927 kb on + strand, within BWI76_RS23290 at 4857.956 kb on - strand, within BWI76_RS23290 at 4858.052 kb on + strand, within BWI76_RS23290 at 4858.060 kb on - strand, within BWI76_RS23290
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,855,935 - BWI76_RS23270 0.82 -0.3 4,856,079 - BWI76_RS23270 0.89 -0.7 4,856,334 - +0.0 4,856,389 - -1.3 4,856,929 + +0.3 4,856,995 + BWI76_RS23280 0.45 +0.4 4,857,274 - +0.4 4,857,369 + BWI76_RS23285 0.24 +0.4 4,857,584 - -0.5 4,857,656 + BWI76_RS23290 0.14 -0.5 4,857,840 - BWI76_RS23290 0.41 -1.1 4,857,853 + BWI76_RS23290 0.43 -0.3 4,857,927 + BWI76_RS23290 0.54 -2.8 4,857,956 - BWI76_RS23290 0.58 -1.2 4,858,052 + BWI76_RS23290 0.72 +0.3 4,858,060 - BWI76_RS23290 0.73 -0.9
Or see this region's nucleotide sequence