Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01185 and BWI76_RS01190 are separated by 80 nucleotides BWI76_RS01190 and BWI76_RS01195 are separated by 138 nucleotides BWI76_RS01195 and BWI76_RS01200 are separated by 25 nucleotides BWI76_RS01200 and BWI76_RS01205 overlap by 4 nucleotides BWI76_RS01205 and BWI76_RS01210 overlap by 4 nucleotides
BWI76_RS01185: BWI76_RS01185 - adenylate cyclase, at 242,042 to 244,591
_RS01185
BWI76_RS01190: BWI76_RS01190 - iron donor protein CyaY, at 244,672 to 244,992
_RS01190
BWI76_RS01195: BWI76_RS01195 - membrane protein, at 245,131 to 245,334
_RS01195
BWI76_RS01200: BWI76_RS01200 - diaminopimelate epimerase, at 245,360 to 246,184
_RS01200
BWI76_RS01205: BWI76_RS01205 - DUF484 family protein, at 246,181 to 246,888
_RS01205
BWI76_RS01210: BWI76_RS01210 - tyrosine recombinase XerC, at 246,885 to 247,787
_RS01210
Position (kb) 245
246
247 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 244.498 kb on + strand at 244.555 kb on - strand at 244.608 kb on + strand at 244.876 kb on - strand, within BWI76_RS01190 at 244.920 kb on - strand, within BWI76_RS01190 at 245.186 kb on + strand, within BWI76_RS01195 at 245.194 kb on - strand, within BWI76_RS01195 at 245.337 kb on + strand at 245.809 kb on - strand, within BWI76_RS01200 at 245.809 kb on - strand, within BWI76_RS01200 at 245.838 kb on + strand, within BWI76_RS01200 at 245.838 kb on + strand, within BWI76_RS01200 at 246.061 kb on - strand, within BWI76_RS01200 at 246.133 kb on + strand at 246.133 kb on + strand at 246.133 kb on + strand at 246.233 kb on + strand at 246.238 kb on + strand at 246.744 kb on + strand, within BWI76_RS01205 at 246.900 kb on - strand at 247.091 kb on + strand, within BWI76_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 244,498 + -0.8 244,555 - -2.1 244,608 + +0.0 244,876 - BWI76_RS01190 0.64 -0.2 244,920 - BWI76_RS01190 0.77 -0.0 245,186 + BWI76_RS01195 0.27 +0.1 245,194 - BWI76_RS01195 0.31 -2.5 245,337 + +0.3 245,809 - BWI76_RS01200 0.54 -0.7 245,809 - BWI76_RS01200 0.54 -2.1 245,838 + BWI76_RS01200 0.58 -0.4 245,838 + BWI76_RS01200 0.58 +1.9 246,061 - BWI76_RS01200 0.85 -0.9 246,133 + -1.1 246,133 + -2.4 246,133 + -2.1 246,233 + -1.9 246,238 + +0.1 246,744 + BWI76_RS01205 0.80 -2.3 246,900 - -3.0 247,091 + BWI76_RS01210 0.23 -4.0
Or see this region's nucleotide sequence