Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12850

Experiment: Sucrose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose 5 mM (C)
2,898,223	+		PFLU_RS12845	0.58	+0.0
2,898,224	-		PFLU_RS12845	0.58	+1.9
2,898,443	-		PFLU_RS12845	0.73	-0.4
2,898,481	+		PFLU_RS12845	0.76	+1.9
2,898,481	+		PFLU_RS12845	0.76	-2.3
2,898,628	+		PFLU_RS12845	0.87	+1.4
2,898,629	-		PFLU_RS12845	0.87	+0.0
2,898,749	+				+1.2
2,898,749	+				-3.5
2,898,749	+				+1.4
2,898,750	-				+1.0
2,898,750	-				+1.0
2,898,750	-				+0.6
2,898,752	-				+2.3
2,898,761	-				+1.2
2,898,835	-				-3.5
2,898,867	-				-3.7
2,898,869	-				-2.0
2,898,869	-				-2.5
2,898,908	+				-0.5
2,898,929	+				-1.5
2,899,078	+				+0.2
2,899,080	+				+0.7
2,899,081	-				+2.6
2,899,139	+				-1.2
2,899,139	+				-2.2
2,899,140	-				-1.6
2,899,140	-				-0.1
2,899,140	-				+1.6
2,899,500	+		PFLU_RS12850	0.28	+3.2
2,899,500	+		PFLU_RS12850	0.28	-0.2
2,899,556	+		PFLU_RS12850	0.32	-1.8
2,899,559	+		PFLU_RS12850	0.32	-1.3
2,899,559	+		PFLU_RS12850	0.32	-1.2
2,899,560	-		PFLU_RS12850	0.32	-0.8
2,899,873	-		PFLU_RS12850	0.55	-2.5
2,899,873	-		PFLU_RS12850	0.55	-3.6
2,899,873	-		PFLU_RS12850	0.55	+2.5
2,900,051	+		PFLU_RS12850	0.67	+1.8
2,900,051	+		PFLU_RS12850	0.67	-0.6
2,900,052	-		PFLU_RS12850	0.67	-2.7
2,900,052	-		PFLU_RS12850	0.67	+0.3
2,900,295	+		PFLU_RS12850	0.85	-2.9
2,900,295	+		PFLU_RS12850	0.85	+1.5
2,900,367	-		PFLU_RS12850	0.90	+0.8
2,900,388	+				+1.3
2,900,480	+				+3.0
2,900,480	+				-2.9
2,900,481	-				+1.0
2,900,481	-				-1.4
2,900,481	-				-2.3
2,900,569	+				-1.6
2,900,569	+				-2.1
2,900,569	+				-2.5
2,900,569	+				-0.4
2,900,569	+				-1.4
2,900,569	+				+0.2
2,900,570	-				-1.4
2,900,570	-				-0.2
2,900,570	-				-2.4
2,900,570	-				-0.6
2,900,570	-				+0.6
2,900,664	-				+0.8
2,900,734	+		PFLU_RS12855	0.11	-2.8
2,900,734	+		PFLU_RS12855	0.11	+0.5
2,900,734	+		PFLU_RS12855	0.11	+0.7
2,900,734	+		PFLU_RS12855	0.11	+1.7
2,900,735	-		PFLU_RS12855	0.11	+2.0
2,900,735	-		PFLU_RS12855	0.11	-3.4
2,900,735	-		PFLU_RS12855	0.11	-0.1
2,900,735	-		PFLU_RS12855	0.11	-0.6
2,900,746	+		PFLU_RS12855	0.11	+0.2
2,900,747	-		PFLU_RS12855	0.11	+0.4
2,900,847	+		PFLU_RS12855	0.18	-1.4
2,901,107	+		PFLU_RS12855	0.34	-1.8
2,901,107	+		PFLU_RS12855	0.34	-1.2
2,901,108	-		PFLU_RS12855	0.34	-2.0
2,901,274	+		PFLU_RS12855	0.45	-1.4
2,901,274	+		PFLU_RS12855	0.45	+0.2
2,901,274	+		PFLU_RS12855	0.45	-1.1
2,901,274	+		PFLU_RS12855	0.45	+1.4
2,901,274	+		PFLU_RS12855	0.45	-2.7
2,901,274	+		PFLU_RS12855	0.45	-1.6
2,901,274	+		PFLU_RS12855	0.45	+1.3
2,901,274	+		PFLU_RS12855	0.45	+1.0
2,901,275	-		PFLU_RS12855	0.45	+1.6
2,901,275	-		PFLU_RS12855	0.45	+0.4
2,901,275	-		PFLU_RS12855	0.45	+2.1
2,901,275	-		PFLU_RS12855	0.45	+0.7
2,901,275	-		PFLU_RS12855	0.45	+1.0
2,901,407	-		PFLU_RS12855	0.53	-3.1
2,901,407	-		PFLU_RS12855	0.53	+0.2