Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28815

Experiment: Cytidine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine 10 mM (C)
6,408,447	+				+0.4
6,408,447	+				+0.1
6,408,505	+				+0.8
6,408,505	+				-1.1
6,408,505	+				-0.9
6,408,505	+				+0.6
6,408,505	+				+0.6
6,408,505	+				-0.9
6,408,505	+				+1.1
6,408,505	+				-1.0
6,408,506	-				+1.5
6,408,506	-				-0.5
6,408,506	-				+0.7
6,408,506	-				-1.6
6,408,506	-				-0.6
6,408,506	-				-0.9
6,408,506	-				+2.2
6,408,506	-				-1.6
6,408,506	-				+1.4
6,408,506	-				+0.6
6,408,506	-				-1.4
6,408,506	-				+1.6
6,408,506	-				-0.2
6,408,506	-				-2.3
6,408,524	+				+1.0
6,408,524	+				-2.3
6,408,524	+				+0.5
6,408,524	+				+1.3
6,408,524	+				+1.2
6,408,525	-				+0.4
6,408,525	-				-3.0
6,408,525	-				+0.4
6,408,525	-				-1.1
6,408,525	-				+0.9
6,408,525	-				-1.4
6,408,525	-				-2.3
6,408,525	-				+1.5
6,408,656	+		PFLU_RS28810	0.19	-1.0
6,408,656	+		PFLU_RS28810	0.19	-0.6
6,408,656	+		PFLU_RS28810	0.19	+1.7
6,408,656	+		PFLU_RS28810	0.19	+2.1
6,408,656	+		PFLU_RS28810	0.19	+0.1
6,408,657	-		PFLU_RS28810	0.19	+0.2
6,408,657	-		PFLU_RS28810	0.19	-0.2
6,408,657	-		PFLU_RS28810	0.19	-0.2
6,408,657	-		PFLU_RS28810	0.19	-0.5
6,408,657	-		PFLU_RS28810	0.19	+0.3
6,408,657	-		PFLU_RS28810	0.19	+0.5
6,408,657	-		PFLU_RS28810	0.19	+1.4
6,408,657	-		PFLU_RS28810	0.19	-0.7
6,408,657	-		PFLU_RS28810	0.19	-1.7
6,408,657	-		PFLU_RS28810	0.19	+0.1
6,408,657	-		PFLU_RS28810	0.19	-0.1
6,408,698	+		PFLU_RS28810	0.26	-1.3
6,408,824	+		PFLU_RS28810	0.46	-0.1
6,408,824	+		PFLU_RS28810	0.46	+0.7
6,408,824	+		PFLU_RS28810	0.46	+1.7
6,408,824	+		PFLU_RS28810	0.46	+1.5
6,408,824	+		PFLU_RS28810	0.46	+0.7
6,408,825	-		PFLU_RS28810	0.46	-0.9
6,408,854	+		PFLU_RS28810	0.50	-1.8
6,408,854	+		PFLU_RS28810	0.50	+0.6
6,408,854	+		PFLU_RS28810	0.50	+0.9
6,408,854	+		PFLU_RS28810	0.50	+0.5
6,409,049	+		PFLU_RS28810	0.81	+1.5
6,409,050	-		PFLU_RS28810	0.82	-0.1
6,409,050	-		PFLU_RS28810	0.82	+0.3
6,409,050	-		PFLU_RS28810	0.82	-0.6
6,409,050	-		PFLU_RS28810	0.82	+2.5
6,409,050	-		PFLU_RS28810	0.82	+0.1
6,409,124	+				+0.2
6,409,124	+				+0.5
6,409,124	+				+0.2
6,409,124	+				+0.8
6,409,124	+				+0.7
6,409,124	+				+1.3
6,409,124	+				+0.7
6,409,124	+				+1.2
6,409,124	+				-1.6
6,409,124	+				+1.1
6,409,124	+				-2.0
6,409,124	+				+2.3
6,409,124	+				-0.0
6,409,124	+				-0.9
6,409,124	+				-0.9
6,409,124	+				-0.6
6,409,124	+				-1.3
6,409,124	+				-0.9
6,409,124	+				+1.0
6,409,124	+				-0.0
6,409,124	+				-0.9
6,409,124	+				+0.6
6,409,124	+				+0.3
6,409,124	+				-0.1
6,409,124	+				+0.3
6,409,124	+				+0.1
6,409,124	+				-0.4
6,409,124	+				-1.1
6,409,124	+				-0.6
6,409,124	+				+2.1
6,409,124	+				+0.4
6,409,125	-				-2.3
6,409,125	-				-2.3
6,409,125	-				+1.5
6,409,125	-				+1.3
6,409,125	-				+0.8
6,409,125	-				+0.5
6,409,125	-				-2.0
6,409,125	-				-2.8
6,409,125	-				+1.4
6,409,125	-				+0.1
6,409,125	-				+0.4
6,409,125	-				+0.7
6,409,125	-				+0.7
6,409,125	-				-1.1
6,409,125	-				+1.7
6,409,125	-				+1.2
6,409,125	-				-0.3
6,409,125	-				+1.7
6,409,125	-				+0.1
6,409,125	-				+1.2
6,409,125	-				+0.1
6,409,125	-				-1.1
6,409,125	-				-1.3
6,409,136	+				+1.1
6,409,136	+				-0.3
6,409,136	+				-1.1
6,409,136	+				-0.3
6,409,137	-				+0.7
6,409,137	-				+2.5
6,409,137	-				-0.3
6,409,137	-				+0.5
6,409,148	+				-1.7
6,409,148	+				-0.9
6,409,149	-				-2.3
6,409,167	+				+2.1
6,409,167	+				+1.7
6,409,168	-				-0.5
6,409,168	-				-2.3
6,409,168	-				+0.2
6,409,407	+		PFLU_RS28815	0.58	-0.6
6,409,407	+		PFLU_RS28815	0.58	-1.1
6,409,407	+		PFLU_RS28815	0.58	-0.1
6,409,407	+		PFLU_RS28815	0.58	-1.1
6,409,407	+		PFLU_RS28815	0.58	+1.7
6,409,407	+		PFLU_RS28815	0.58	-3.1
6,409,407	+		PFLU_RS28815	0.58	+0.2
6,409,407	+		PFLU_RS28815	0.58	-1.7
6,409,407	+		PFLU_RS28815	0.58	+0.7
6,409,407	+		PFLU_RS28815	0.58	-0.1
6,409,407	+		PFLU_RS28815	0.58	-1.0
6,409,408	-		PFLU_RS28815	0.59	+0.4
6,409,408	-		PFLU_RS28815	0.59	-1.2
6,409,408	-		PFLU_RS28815	0.59	-1.1
6,409,408	-		PFLU_RS28815	0.59	+1.0
6,409,408	-		PFLU_RS28815	0.59	-0.4
6,409,408	-		PFLU_RS28815	0.59	+0.3
6,409,408	-		PFLU_RS28815	0.59	-2.4
6,409,470	-		PFLU_RS28815	0.88	-1.0
6,409,487	+				-1.1
6,409,487	+				+0.6
6,409,487	+				+0.1
6,409,487	+				+1.7
6,409,488	-				-1.1
6,409,488	-				+1.1
6,409,488	-				+0.4
6,409,488	-				+0.4
6,409,488	-				-0.3
6,409,488	-				+0.9
6,409,488	-				-0.5
6,409,490	+				-2.3
6,409,490	+				+0.3
6,409,490	+				-1.4
6,409,490	+				+1.2
6,409,490	+				+0.8
6,409,490	+				-1.4
6,409,491	-				-2.0
6,409,491	-				+1.4
6,409,491	-				+1.1
6,409,491	-				-0.2
6,409,491	-				+0.9
6,409,526	+				-1.1
6,409,526	+				+0.1
6,409,526	+				-1.7
6,409,526	+				+0.7
6,409,526	+				-0.1
6,409,527	-				-0.5
6,409,527	-				+1.1
6,409,527	-				-2.3
6,409,527	-				+1.6
6,409,527	-				+0.1
6,409,527	-				-1.4
6,409,527	-				+0.7
6,410,169	+		PFLU_RS28820	0.80	+0.1
6,410,169	+		PFLU_RS28820	0.80	+0.8
6,410,170	-		PFLU_RS28820	0.80	+0.5
6,410,345	+				+0.7
6,410,345	+				+2.1
6,410,346	-				-0.4
6,410,346	-				+0.6
6,410,357	-				-1.1
6,410,357	-				-0.3
6,410,357	-				-2.0
6,410,357	-				-1.9
6,410,431	+		PFLU_RS28825	0.13	-0.6
6,410,431	+		PFLU_RS28825	0.13	-0.4
6,410,431	+		PFLU_RS28825	0.13	+0.7
6,410,431	+		PFLU_RS28825	0.13	+1.2
6,410,431	+		PFLU_RS28825	0.13	-0.5
6,410,431	+		PFLU_RS28825	0.13	+0.1
6,410,431	+		PFLU_RS28825	0.13	-0.7
6,410,431	+		PFLU_RS28825	0.13	-0.3
6,410,431	+		PFLU_RS28825	0.13	-0.1
6,410,431	+		PFLU_RS28825	0.13	+0.7
6,410,431	+		PFLU_RS28825	0.13	+0.7
6,410,431	+		PFLU_RS28825	0.13	+1.0
6,410,431	+		PFLU_RS28825	0.13	+0.6
6,410,431	+		PFLU_RS28825	0.13	+1.6
6,410,431	+		PFLU_RS28825	0.13	+1.0
6,410,431	+		PFLU_RS28825	0.13	-0.5
6,410,431	+		PFLU_RS28825	0.13	+1.1
6,410,431	+		PFLU_RS28825	0.13	+0.3
6,410,431	+		PFLU_RS28825	0.13	+0.7
6,410,431	+		PFLU_RS28825	0.13	-1.9
6,410,431	+		PFLU_RS28825	0.13	-1.6
6,410,432	-		PFLU_RS28825	0.13	-0.5
6,410,432	-		PFLU_RS28825	0.13	-1.1
6,410,432	-		PFLU_RS28825	0.13	-0.9
6,410,432	-		PFLU_RS28825	0.13	+1.4
6,410,432	-		PFLU_RS28825	0.13	+0.4
6,410,432	-		PFLU_RS28825	0.13	-2.3
6,410,432	-		PFLU_RS28825	0.13	+1.7
6,410,432	-		PFLU_RS28825	0.13	-1.3
6,410,432	-		PFLU_RS28825	0.13	-1.6
6,410,432	-		PFLU_RS28825	0.13	-0.4
6,410,432	-		PFLU_RS28825	0.13	+0.6
6,410,432	-		PFLU_RS28825	0.13	+0.1
6,410,432	-		PFLU_RS28825	0.13	-0.1
6,410,432	-		PFLU_RS28825	0.13	-0.9
6,410,432	-		PFLU_RS28825	0.13	-0.0
6,410,432	-		PFLU_RS28825	0.13	+0.4
6,410,432	-		PFLU_RS28825	0.13	+0.7
6,410,432	-		PFLU_RS28825	0.13	+1.7
6,410,432	-		PFLU_RS28825	0.13	+1.2
6,410,494	+		PFLU_RS28825	0.21	+0.4