Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16365

Experiment: Cytidine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine 10 mM (C)
3,711,122	+				-2.9
3,711,123	-				-2.4
3,711,128	+				-0.7
3,711,185	+				+1.0
3,711,185	+				-0.9
3,711,185	+				-0.6
3,711,185	+				+1.0
3,711,186	-				-3.4
3,711,186	-				+1.3
3,711,192	+				-2.3
3,711,300	+				-0.8
3,711,300	+				-1.1
3,711,301	-				-0.3
3,711,359	+				-0.1
3,711,359	+				-0.7
3,711,359	+				-1.9
3,711,360	-				-1.2
3,711,360	-				-0.8
3,711,360	-				-0.9
3,711,386	+				+0.0
3,711,387	-				+0.0
3,711,403	+				+0.3
3,711,403	+				-0.6
3,711,403	+				+0.3
3,711,403	+				+0.3
3,711,403	+				-0.8
3,711,403	+				+1.3
3,711,403	+				-1.3
3,711,403	+				+1.4
3,711,403	+				-3.1
3,711,403	+				-2.5
3,711,403	+				-2.9
3,711,403	+				-0.1
3,711,404	-				+0.9
3,711,404	-				+1.8
3,711,404	-				-1.9
3,711,404	-				-0.1
3,711,404	-				-1.7
3,711,404	-				-0.7
3,711,404	-				-1.5
3,711,450	+				-2.1
3,711,450	+				-1.7
3,711,450	+				-2.2
3,711,451	-				-2.2
3,711,451	-				-1.1
3,711,451	-				-1.5
3,711,489	+				-0.5
3,711,489	+				-0.1
3,711,489	+				+0.9
3,711,489	+				-1.7
3,711,489	+				+0.5
3,711,490	-				+0.1
3,711,490	-				-1.7
3,711,490	-				+1.1
3,711,490	-				+0.2
3,711,490	-				-0.2
3,711,490	-				-0.1
3,711,490	-				-1.4
3,711,492	+				-2.4
3,711,492	+				-0.1
3,711,492	+				-0.3
3,711,492	+				+0.2
3,711,492	+				-0.4
3,711,493	-				-1.3
3,711,493	-				+1.6
3,711,493	-				-1.1
3,711,493	-				-1.3
3,711,496	+				+0.3
3,711,496	+				+1.6
3,711,496	+				-1.1
3,711,496	+				+0.3
3,711,496	+				-0.7
3,711,496	+				+0.4
3,711,496	+				-3.2
3,711,496	+				+0.0
3,711,497	-				+1.5
3,711,497	-				-0.7
3,711,497	-				-1.1
3,711,497	-				-1.7
3,711,497	-				-1.6
3,711,497	-				+0.8
3,711,497	-				-0.2
3,711,497	-				+0.6
3,711,497	-				-0.6
3,711,497	-				-1.1
3,711,547	+				-1.5
3,711,547	+				-2.9
3,711,547	+				-1.5
3,711,547	+				-0.7
3,711,547	+				-0.1
3,711,547	+				-1.9
3,711,547	+				-2.0
3,711,547	+				+0.7
3,711,547	+				-2.2
3,711,547	+				+0.7
3,711,548	-				-1.3
3,711,548	-				-1.1
3,711,548	-				+0.5
3,711,548	-				+0.7
3,711,548	-				-1.1
3,711,548	-				-2.4
3,711,548	-				-2.2
3,711,609	+		PFLU_RS16360	0.17	-1.7
3,711,609	+		PFLU_RS16360	0.17	+0.9
3,711,609	+		PFLU_RS16360	0.17	-0.7
3,711,767	+		PFLU_RS16360	0.59	+1.3
3,711,768	-		PFLU_RS16360	0.59	+1.6
3,711,779	+		PFLU_RS16360	0.62	-0.3
3,711,779	+		PFLU_RS16360	0.62	-0.5
3,711,779	+		PFLU_RS16360	0.62	+2.3
3,711,780	-		PFLU_RS16360	0.62	+0.9
3,711,780	-		PFLU_RS16360	0.62	-1.5
3,711,780	-		PFLU_RS16360	0.62	+0.3
3,711,780	-		PFLU_RS16360	0.62	+0.3
3,711,780	-		PFLU_RS16360	0.62	-2.2
3,711,780	-		PFLU_RS16360	0.62	-2.2
3,711,783	-		PFLU_RS16360	0.63	-2.2
3,711,783	-		PFLU_RS16360	0.63	-1.7
3,711,783	-		PFLU_RS16360	0.63	-0.3
3,711,878	-		PFLU_RS16360	0.88	-2.3
3,711,878	-		PFLU_RS16360	0.88	+2.5
3,711,878	-		PFLU_RS16360	0.88	-1.9
3,711,905	+				-0.5
3,711,905	+				-0.3
3,711,905	+				+0.3
3,711,906	-				-1.5
3,711,941	+				+0.9
3,711,941	+				+0.9
3,711,941	+				+0.3
3,711,941	+				+2.7
3,711,941	+				+1.5
3,711,942	-				-0.1
3,711,942	-				+1.3
3,712,032	+		PFLU_RS16365	0.49	+0.1
3,712,052	+		PFLU_RS16365	0.59	-0.6
3,712,053	-		PFLU_RS16365	0.60	+0.7
3,712,053	-		PFLU_RS16365	0.60	-0.1
3,712,053	-		PFLU_RS16365	0.60	+1.9
3,712,053	-		PFLU_RS16365	0.60	+1.4
3,712,053	-		PFLU_RS16365	0.60	+1.3
3,712,053	-		PFLU_RS16365	0.60	+1.2
3,712,053	-		PFLU_RS16365	0.60	-1.5
3,712,103	+		PFLU_RS16365	0.86	+1.4
3,712,103	+		PFLU_RS16365	0.86	-0.3
3,712,104	-		PFLU_RS16365	0.87	-0.3
3,712,104	-		PFLU_RS16365	0.87	+2.1
3,712,152	+				-0.1
3,712,153	-				-0.5
3,712,153	-				-0.6
3,712,153	-				+0.5
3,712,188	+				+0.5
3,712,215	+				-0.3
3,712,215	+				-0.1
3,712,215	+				-2.3
3,712,215	+				-0.5
3,712,215	+				+0.5
3,712,215	+				+0.5
3,712,215	+				-0.3
3,712,216	-				-1.9
3,712,216	-				-1.1
3,712,216	-				+0.3
3,712,216	-				+1.3
3,712,216	-				+0.7
3,712,216	-				-2.9
3,712,220	+				-1.5
3,712,220	+				-2.2
3,712,220	+				+0.4
3,712,220	+				-0.1
3,712,221	-				-0.6
3,712,221	-				-3.1
3,712,324	-				-0.8
3,712,341	+				-2.2
3,712,341	+				-0.5
3,712,404	+		PFLU_RS16370	0.17	+0.3
3,712,404	+		PFLU_RS16370	0.17	-1.1
3,712,404	+		PFLU_RS16370	0.17	-0.2
3,712,405	-		PFLU_RS16370	0.17	+1.4
3,712,405	-		PFLU_RS16370	0.17	-1.4
3,712,405	-		PFLU_RS16370	0.17	+2.1
3,712,405	-		PFLU_RS16370	0.17	+0.4
3,712,405	-		PFLU_RS16370	0.17	+1.3
3,712,405	-		PFLU_RS16370	0.17	-2.7
3,712,448	-		PFLU_RS16370	0.21	+0.5
3,712,495	+		PFLU_RS16370	0.26	+2.7
3,712,496	-		PFLU_RS16370	0.26	+0.7
3,712,603	+		PFLU_RS16370	0.38	-0.3
3,712,603	+		PFLU_RS16370	0.38	+0.0
3,712,603	+		PFLU_RS16370	0.38	+0.7
3,712,603	+		PFLU_RS16370	0.38	-1.7
3,712,604	-		PFLU_RS16370	0.38	+0.5
3,712,604	-		PFLU_RS16370	0.38	+1.7
3,712,604	-		PFLU_RS16370	0.38	-1.1
3,712,604	-		PFLU_RS16370	0.38	+0.6
3,712,604	-		PFLU_RS16370	0.38	-0.7
3,712,667	-		PFLU_RS16370	0.45	+2.8
3,712,667	-		PFLU_RS16370	0.45	+0.3
3,712,981	+		PFLU_RS16370	0.79	-0.7
3,712,981	+		PFLU_RS16370	0.79	-0.5
3,712,982	-		PFLU_RS16370	0.79	-0.3
3,712,982	-		PFLU_RS16370	0.79	+0.3
3,712,982	-		PFLU_RS16370	0.79	+1.0
3,712,984	+		PFLU_RS16370	0.79	-1.1
3,712,984	+		PFLU_RS16370	0.79	-0.9
3,712,985	-		PFLU_RS16370	0.79	+0.8
3,712,985	-		PFLU_RS16370	0.79	+0.6
3,712,985	-		PFLU_RS16370	0.79	-1.9