Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30725

Experiment: Ferulic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferulic Acid 2 mM (C)
2,713,956	+		PFLU_RS12225	0.43	+0.0
2,713,956	+		PFLU_RS12225	0.43	-0.1
2,713,956	+		PFLU_RS12225	0.43	+2.0
2,713,957	-		PFLU_RS12225	0.43	-0.3
2,713,957	-		PFLU_RS12225	0.43	-0.3
2,713,996	+		PFLU_RS12225	0.46	-0.3
2,713,996	+		PFLU_RS12225	0.46	+0.2
2,713,996	+		PFLU_RS12225	0.46	+1.1
2,713,996	+		PFLU_RS12225	0.46	+0.5
2,713,997	-		PFLU_RS12225	0.46	+0.5
2,714,084	+		PFLU_RS12225	0.52	-1.1
2,714,126	+		PFLU_RS12225	0.56	+0.2
2,714,158	-		PFLU_RS12225	0.58	+1.0
2,714,210	-		PFLU_RS12225	0.62	-0.2
2,714,215	-		PFLU_RS12225	0.62	-1.3
2,714,291	+		PFLU_RS12225	0.68	+0.1
2,714,292	-		PFLU_RS12225	0.68	-0.2
2,714,292	-		PFLU_RS12225	0.68	-0.1
2,714,309	+		PFLU_RS12225	0.69	-0.2
2,714,309	+		PFLU_RS12225	0.69	-0.3
2,714,310	-		PFLU_RS12225	0.70	-0.5
2,714,355	-		PFLU_RS12225	0.73	-0.3
2,714,373	+		PFLU_RS12225	0.74	+1.2
2,714,373	+		PFLU_RS12225	0.74	+0.8
2,714,373	+		PFLU_RS12225	0.74	-0.8
2,714,373	+		PFLU_RS12225	0.74	+0.1
2,714,374	-		PFLU_RS12225	0.74	+0.8
2,714,374	-		PFLU_RS12225	0.74	+2.6
2,714,375	+		PFLU_RS12225	0.75	+1.6
2,714,376	-		PFLU_RS12225	0.75	+1.7
2,714,376	-		PFLU_RS12225	0.75	+2.0
2,714,402	+		PFLU_RS12225	0.77	-0.1
2,714,402	+		PFLU_RS12225	0.77	+0.7
2,714,403	-		PFLU_RS12225	0.77	-0.3
2,714,403	-		PFLU_RS12225	0.77	+2.2
2,714,403	-		PFLU_RS12225	0.77	-0.3
2,714,499	+		PFLU_RS12225	0.84	-1.1
2,714,499	+		PFLU_RS12225	0.84	+0.1
2,714,499	+		PFLU_RS12225	0.84	+0.7
2,714,499	+		PFLU_RS12225	0.84	+1.3
2,714,499	+		PFLU_RS12225	0.84	+0.9
2,714,500	-		PFLU_RS12225	0.84	-0.1
2,714,500	-		PFLU_RS12225	0.84	-1.4
2,714,500	-		PFLU_RS12225	0.84	+0.4
2,714,500	-		PFLU_RS12225	0.84	-0.2
2,714,500	-		PFLU_RS12225	0.84	-0.9
2,714,500	-		PFLU_RS12225	0.84	-2.9
2,714,500	-		PFLU_RS12225	0.84	-1.3
2,714,500	-		PFLU_RS12225	0.84	+2.5
2,714,500	-		PFLU_RS12225	0.84	+0.9
2,714,500	-		PFLU_RS12225	0.84	+0.0
2,714,500	-		PFLU_RS12225	0.84	-1.7
2,714,511	+		PFLU_RS12225	0.85	+0.7
2,714,547	+		PFLU_RS12225	0.88	+0.8
2,714,548	-		PFLU_RS12225	0.88	-1.8
2,714,583	+				+0.8
2,714,637	+				+0.6
2,714,637	+				-0.3
2,714,637	+				-0.4
2,714,637	+				-1.9
2,714,637	+				-0.3
2,714,637	+				-0.3
2,714,638	-				-0.6
2,714,638	-				+1.8
2,714,638	-				-0.6
2,714,638	-				-2.8
2,714,638	-				-0.2
2,714,638	-				-1.1
2,714,638	-				+1.0
2,714,638	-				-0.5
2,714,638	-				-0.1
2,714,698	-				-2.1
2,714,698	-				+1.5
2,714,718	+				-1.9
2,714,718	+				-2.3
2,714,718	+				-2.8
2,714,719	-				-1.5
2,714,719	-				-0.6
2,714,719	-				+0.7
2,714,719	-				-0.8
2,714,719	-				+1.8
2,714,721	+				+0.6
2,714,722	-				+1.8
2,714,723	+				+2.0
2,714,723	+				-0.3
2,714,723	+				+1.0
2,714,723	+				+0.1
2,714,723	+				+1.2
2,714,723	+				-2.1
2,714,724	-				-0.1
2,714,724	-				+1.7
2,714,724	-				-1.3
2,714,724	-				+3.1
2,714,724	-				+2.0
2,714,724	-				-1.8
2,714,735	-				-0.5
2,714,735	-				+0.2
2,714,737	+				+0.7
2,714,737	+				-0.3
2,714,738	-				+1.6
2,714,749	+				-2.6
2,714,777	-				+0.2
2,714,846	+		PFLU_RS30725	0.25	+2.7
2,714,847	-		PFLU_RS30725	0.25	-0.8
2,714,870	+		PFLU_RS30725	0.34	-1.0
2,714,870	+		PFLU_RS30725	0.34	+1.2
2,714,870	+		PFLU_RS30725	0.34	-1.8
2,714,870	+		PFLU_RS30725	0.34	+1.2
2,714,871	-		PFLU_RS30725	0.35	+0.2
2,714,871	-		PFLU_RS30725	0.35	+0.8
2,714,871	-		PFLU_RS30725	0.35	+0.7
2,714,871	-		PFLU_RS30725	0.35	-0.7
2,714,873	+		PFLU_RS30725	0.35	-0.6
2,714,874	-		PFLU_RS30725	0.36	-1.1
2,714,936	+		PFLU_RS30725	0.60	+0.5
2,715,174	+				+2.0
2,715,176	+				+2.2
2,715,176	+				-1.1
2,715,176	+				+1.7
2,715,176	+				+1.0
2,715,176	+				+2.7
2,715,176	+				-1.6
2,715,177	-				-0.1
2,715,177	-				+2.4
2,715,180	+				+2.5
2,715,211	+				+1.2
2,715,230	+				-0.2
2,715,231	-				+1.2
2,715,231	-				-2.2
2,715,253	+				+0.1
2,715,260	+				+2.4
2,715,270	+				+2.0
2,715,295	+				-0.4
2,715,295	+				-1.1
2,715,295	+				+3.2
2,715,295	+				-2.6
2,715,416	+				-0.9
2,715,417	-				+0.5
2,715,417	-				+1.6
2,715,428	+				+0.9
2,715,429	-				+2.2
2,715,429	-				-0.4
2,715,437	-				-1.4
2,715,437	-				+2.2
2,715,523	-		PFLU_RS12230	0.26	-2.9
2,715,540	+		PFLU_RS12230	0.31	-1.1
2,715,540	+		PFLU_RS12230	0.31	-0.9
2,715,540	+		PFLU_RS12230	0.31	+0.1
2,715,541	-		PFLU_RS12230	0.31	-0.6
2,715,611	+		PFLU_RS12230	0.51	-2.6
2,715,611	+		PFLU_RS12230	0.51	+1.0
2,715,612	-		PFLU_RS12230	0.52	-2.2
2,715,612	-		PFLU_RS12230	0.52	+0.2
2,715,612	-		PFLU_RS12230	0.52	-1.9
2,715,621	+		PFLU_RS12230	0.54	-1.6
2,715,622	-		PFLU_RS12230	0.55	+0.0
2,715,636	+		PFLU_RS12230	0.59	+2.2
2,715,682	-		PFLU_RS12230	0.72	-0.3
2,715,752	+				+0.6
2,715,753	-				+0.5
2,715,753	-				+0.8
2,715,782	+				-0.8
2,715,785	-				-1.1
2,715,870	+		PFLU_RS12235	0.11	-0.7
2,715,870	+		PFLU_RS12235	0.11	+1.7
2,715,870	+		PFLU_RS12235	0.11	+1.0
2,715,871	-		PFLU_RS12235	0.11	+1.5
2,715,871	-		PFLU_RS12235	0.11	-0.5
2,715,875	+		PFLU_RS12235	0.12	+0.9
2,715,876	-		PFLU_RS12235	0.12	+0.6
2,715,899	+		PFLU_RS12235	0.15	-0.8
2,715,922	+		PFLU_RS12235	0.19	-0.2
2,715,922	+		PFLU_RS12235	0.19	-0.4
2,715,922	+		PFLU_RS12235	0.19	-0.9
2,715,923	-		PFLU_RS12235	0.19	-2.1
2,715,923	-		PFLU_RS12235	0.19	-2.2
2,715,962	+		PFLU_RS12235	0.25	+0.0
2,715,963	-		PFLU_RS12235	0.25	-0.4
2,716,014	-		PFLU_RS12235	0.32	+1.7
2,716,025	+		PFLU_RS12235	0.34	-1.7