Experiment: Ferulic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20865 and PFLU_RS20870 are separated by 94 nucleotides PFLU_RS20870 and PFLU_RS20875 overlap by 17 nucleotides PFLU_RS20875 and PFLU_RS20880 are separated by 148 nucleotides
PFLU_RS20865: PFLU_RS20865 - DUF1963 domain-containing protein, at 4,689,643 to 4,690,338
_RS20865
PFLU_RS20870: PFLU_RS20870 - hypothetical protein, at 4,690,433 to 4,690,813
_RS20870
PFLU_RS20875: PFLU_RS20875 - hypothetical protein, at 4,690,797 to 4,691,516
_RS20875
PFLU_RS20880: PFLU_RS20880 - hypothetical protein, at 4,691,665 to 4,692,912
_RS20880
Position (kb) 4690
4691
4692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4689.823 kb on + strand, within PFLU_RS20865 at 4689.823 kb on + strand, within PFLU_RS20865 at 4689.823 kb on + strand, within PFLU_RS20865 at 4689.824 kb on - strand, within PFLU_RS20865 at 4689.824 kb on - strand, within PFLU_RS20865 at 4689.824 kb on - strand, within PFLU_RS20865 at 4689.972 kb on + strand, within PFLU_RS20865 at 4689.973 kb on - strand, within PFLU_RS20865 at 4689.973 kb on - strand, within PFLU_RS20865 at 4690.091 kb on + strand, within PFLU_RS20865 at 4690.091 kb on + strand, within PFLU_RS20865 at 4690.091 kb on + strand, within PFLU_RS20865 at 4690.092 kb on - strand, within PFLU_RS20865 at 4690.092 kb on - strand, within PFLU_RS20865 at 4690.092 kb on - strand, within PFLU_RS20865 at 4690.118 kb on + strand, within PFLU_RS20865 at 4690.119 kb on - strand, within PFLU_RS20865 at 4690.119 kb on - strand, within PFLU_RS20865 at 4690.126 kb on + strand, within PFLU_RS20865 at 4690.126 kb on + strand, within PFLU_RS20865 at 4690.127 kb on - strand, within PFLU_RS20865 at 4690.127 kb on - strand, within PFLU_RS20865 at 4690.127 kb on - strand, within PFLU_RS20865 at 4690.129 kb on + strand, within PFLU_RS20865 at 4690.130 kb on - strand, within PFLU_RS20865 at 4690.130 kb on - strand, within PFLU_RS20865 at 4690.130 kb on - strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.150 kb on + strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.151 kb on - strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.158 kb on + strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.159 kb on - strand, within PFLU_RS20865 at 4690.321 kb on + strand at 4690.321 kb on + strand at 4690.322 kb on - strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.430 kb on + strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.431 kb on - strand at 4690.547 kb on - strand, within PFLU_RS20870 at 4690.547 kb on - strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.556 kb on + strand, within PFLU_RS20870 at 4690.557 kb on - strand, within PFLU_RS20870 at 4690.839 kb on + strand at 4690.840 kb on - strand at 4690.879 kb on + strand, within PFLU_RS20875 at 4690.895 kb on + strand, within PFLU_RS20875 at 4690.896 kb on - strand, within PFLU_RS20875 at 4690.896 kb on - strand, within PFLU_RS20875 at 4690.913 kb on - strand, within PFLU_RS20875 at 4690.913 kb on - strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4690.996 kb on + strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.997 kb on - strand, within PFLU_RS20875 at 4690.999 kb on + strand, within PFLU_RS20875 at 4690.999 kb on + strand, within PFLU_RS20875 at 4690.999 kb on + strand, within PFLU_RS20875 at 4691.000 kb on - strand, within PFLU_RS20875 at 4691.099 kb on + strand, within PFLU_RS20875 at 4691.276 kb on - strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.283 kb on + strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.284 kb on - strand, within PFLU_RS20875 at 4691.518 kb on + strand at 4691.518 kb on + strand at 4691.518 kb on + strand at 4691.519 kb on - strand at 4691.519 kb on - strand at 4691.519 kb on - strand at 4691.519 kb on - strand at 4691.575 kb on + strand at 4691.575 kb on + strand at 4691.576 kb on - strand at 4691.576 kb on - strand at 4691.576 kb on - strand at 4691.593 kb on + strand at 4691.594 kb on - strand at 4691.600 kb on + strand at 4691.665 kb on - strand at 4691.803 kb on - strand, within PFLU_RS20880 at 4691.948 kb on - strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.986 kb on + strand, within PFLU_RS20880 at 4691.987 kb on - strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.989 kb on + strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4691.990 kb on - strand, within PFLU_RS20880 at 4692.091 kb on + strand, within PFLU_RS20880 at 4692.092 kb on - strand, within PFLU_RS20880 at 4692.205 kb on - strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.400 kb on + strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.401 kb on - strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.406 kb on + strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.407 kb on - strand, within PFLU_RS20880 at 4692.493 kb on + strand, within PFLU_RS20880 at 4692.493 kb on + strand, within PFLU_RS20880 at 4692.494 kb on - strand, within PFLU_RS20880 at 4692.494 kb on - strand, within PFLU_RS20880
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 2 mM (C) remove 4,689,823 + PFLU_RS20865 0.26 -0.2 4,689,823 + PFLU_RS20865 0.26 -0.9 4,689,823 + PFLU_RS20865 0.26 -1.3 4,689,824 - PFLU_RS20865 0.26 -0.0 4,689,824 - PFLU_RS20865 0.26 +0.0 4,689,824 - PFLU_RS20865 0.26 +1.7 4,689,972 + PFLU_RS20865 0.47 +1.2 4,689,973 - PFLU_RS20865 0.47 -0.5 4,689,973 - PFLU_RS20865 0.47 -0.8 4,690,091 + PFLU_RS20865 0.64 +0.2 4,690,091 + PFLU_RS20865 0.64 -0.5 4,690,091 + PFLU_RS20865 0.64 -1.2 4,690,092 - PFLU_RS20865 0.65 -1.9 4,690,092 - PFLU_RS20865 0.65 -0.8 4,690,092 - PFLU_RS20865 0.65 +0.2 4,690,118 + PFLU_RS20865 0.68 -2.0 4,690,119 - PFLU_RS20865 0.68 -0.7 4,690,119 - PFLU_RS20865 0.68 +2.5 4,690,126 + PFLU_RS20865 0.69 +0.5 4,690,126 + PFLU_RS20865 0.69 +0.5 4,690,127 - PFLU_RS20865 0.70 -0.3 4,690,127 - PFLU_RS20865 0.70 +1.0 4,690,127 - PFLU_RS20865 0.70 +0.1 4,690,129 + PFLU_RS20865 0.70 -0.4 4,690,130 - PFLU_RS20865 0.70 +0.4 4,690,130 - PFLU_RS20865 0.70 -0.0 4,690,130 - PFLU_RS20865 0.70 +0.1 4,690,150 + PFLU_RS20865 0.73 +1.0 4,690,150 + PFLU_RS20865 0.73 -0.4 4,690,150 + PFLU_RS20865 0.73 +0.1 4,690,150 + PFLU_RS20865 0.73 +1.3 4,690,150 + PFLU_RS20865 0.73 -0.5 4,690,150 + PFLU_RS20865 0.73 -0.3 4,690,150 + PFLU_RS20865 0.73 -2.5 4,690,150 + PFLU_RS20865 0.73 +1.4 4,690,150 + PFLU_RS20865 0.73 +0.3 4,690,150 + PFLU_RS20865 0.73 +1.8 4,690,150 + PFLU_RS20865 0.73 -0.9 4,690,150 + PFLU_RS20865 0.73 +0.7 4,690,150 + PFLU_RS20865 0.73 -0.8 4,690,150 + PFLU_RS20865 0.73 +0.4 4,690,151 - PFLU_RS20865 0.73 +0.5 4,690,151 - PFLU_RS20865 0.73 -0.0 4,690,151 - PFLU_RS20865 0.73 +1.5 4,690,151 - PFLU_RS20865 0.73 -1.6 4,690,151 - PFLU_RS20865 0.73 +0.7 4,690,151 - PFLU_RS20865 0.73 -2.4 4,690,151 - PFLU_RS20865 0.73 +1.0 4,690,151 - PFLU_RS20865 0.73 -0.2 4,690,151 - PFLU_RS20865 0.73 -0.7 4,690,151 - PFLU_RS20865 0.73 -0.0 4,690,158 + PFLU_RS20865 0.74 +1.2 4,690,158 + PFLU_RS20865 0.74 -0.0 4,690,158 + PFLU_RS20865 0.74 -1.3 4,690,158 + PFLU_RS20865 0.74 +0.1 4,690,158 + PFLU_RS20865 0.74 +0.2 4,690,159 - PFLU_RS20865 0.74 +1.8 4,690,159 - PFLU_RS20865 0.74 +1.2 4,690,159 - PFLU_RS20865 0.74 -1.9 4,690,159 - PFLU_RS20865 0.74 -0.8 4,690,159 - PFLU_RS20865 0.74 +0.5 4,690,159 - PFLU_RS20865 0.74 +0.6 4,690,159 - PFLU_RS20865 0.74 -1.0 4,690,159 - PFLU_RS20865 0.74 +1.2 4,690,159 - PFLU_RS20865 0.74 +2.4 4,690,321 + +0.9 4,690,321 + +1.7 4,690,322 - -2.9 4,690,430 + -2.0 4,690,430 + +0.7 4,690,430 + -1.0 4,690,430 + -1.8 4,690,430 + +1.3 4,690,430 + -0.2 4,690,430 + -0.6 4,690,430 + +1.5 4,690,430 + -0.9 4,690,430 + -1.3 4,690,430 + -0.1 4,690,430 + +1.5 4,690,430 + -0.5 4,690,430 + -0.9 4,690,430 + -0.4 4,690,430 + +0.3 4,690,430 + +0.4 4,690,431 - +0.8 4,690,431 - -0.8 4,690,431 - +0.5 4,690,431 - +0.2 4,690,431 - -1.0 4,690,431 - +0.9 4,690,431 - -1.0 4,690,431 - +1.5 4,690,431 - +0.8 4,690,431 - +0.1 4,690,431 - +0.6 4,690,431 - -0.7 4,690,431 - +1.9 4,690,431 - -0.5 4,690,431 - +0.5 4,690,431 - +0.8 4,690,547 - PFLU_RS20870 0.30 +3.7 4,690,547 - PFLU_RS20870 0.30 +1.2 4,690,556 + PFLU_RS20870 0.32 +0.1 4,690,556 + PFLU_RS20870 0.32 -1.5 4,690,556 + PFLU_RS20870 0.32 -1.0 4,690,556 + PFLU_RS20870 0.32 +2.1 4,690,557 - PFLU_RS20870 0.33 -1.4 4,690,839 + -1.5 4,690,840 - +1.5 4,690,879 + PFLU_RS20875 0.11 +0.2 4,690,895 + PFLU_RS20875 0.14 +0.1 4,690,896 - PFLU_RS20875 0.14 +4.3 4,690,896 - PFLU_RS20875 0.14 +0.1 4,690,913 - PFLU_RS20875 0.16 -0.4 4,690,913 - PFLU_RS20875 0.16 +1.3 4,690,996 + PFLU_RS20875 0.28 -0.5 4,690,996 + PFLU_RS20875 0.28 -1.4 4,690,997 - PFLU_RS20875 0.28 +0.1 4,690,997 - PFLU_RS20875 0.28 -2.3 4,690,997 - PFLU_RS20875 0.28 +1.5 4,690,997 - PFLU_RS20875 0.28 +1.7 4,690,997 - PFLU_RS20875 0.28 +1.1 4,690,999 + PFLU_RS20875 0.28 +0.9 4,690,999 + PFLU_RS20875 0.28 +0.3 4,690,999 + PFLU_RS20875 0.28 +0.1 4,691,000 - PFLU_RS20875 0.28 -0.5 4,691,099 + PFLU_RS20875 0.42 -0.6 4,691,276 - PFLU_RS20875 0.67 +0.4 4,691,283 + PFLU_RS20875 0.68 +1.1 4,691,283 + PFLU_RS20875 0.68 -0.2 4,691,284 - PFLU_RS20875 0.68 -0.1 4,691,284 - PFLU_RS20875 0.68 -0.2 4,691,284 - PFLU_RS20875 0.68 -0.0 4,691,284 - PFLU_RS20875 0.68 -1.9 4,691,518 + -1.6 4,691,518 + -0.9 4,691,518 + -1.0 4,691,519 - +0.5 4,691,519 - -0.2 4,691,519 - -0.2 4,691,519 - -0.3 4,691,575 + -0.3 4,691,575 + -3.3 4,691,576 - +0.6 4,691,576 - -1.5 4,691,576 - +0.1 4,691,593 + +0.2 4,691,594 - +0.9 4,691,600 + -0.2 4,691,665 - +0.0 4,691,803 - PFLU_RS20880 0.11 +0.3 4,691,948 - PFLU_RS20880 0.23 +0.5 4,691,986 + PFLU_RS20880 0.26 +1.5 4,691,986 + PFLU_RS20880 0.26 -2.4 4,691,986 + PFLU_RS20880 0.26 -0.5 4,691,987 - PFLU_RS20880 0.26 +0.6 4,691,989 + PFLU_RS20880 0.26 +0.5 4,691,989 + PFLU_RS20880 0.26 -1.0 4,691,989 + PFLU_RS20880 0.26 -0.5 4,691,989 + PFLU_RS20880 0.26 -0.1 4,691,989 + PFLU_RS20880 0.26 -0.8 4,691,989 + PFLU_RS20880 0.26 +1.5 4,691,989 + PFLU_RS20880 0.26 +0.2 4,691,989 + PFLU_RS20880 0.26 +0.5 4,691,989 + PFLU_RS20880 0.26 +1.5 4,691,989 + PFLU_RS20880 0.26 +0.9 4,691,989 + PFLU_RS20880 0.26 +2.9 4,691,990 - PFLU_RS20880 0.26 +3.1 4,691,990 - PFLU_RS20880 0.26 -0.4 4,691,990 - PFLU_RS20880 0.26 +1.5 4,691,990 - PFLU_RS20880 0.26 -0.9 4,691,990 - PFLU_RS20880 0.26 -1.4 4,691,990 - PFLU_RS20880 0.26 -1.5 4,691,990 - PFLU_RS20880 0.26 -0.3 4,692,091 + PFLU_RS20880 0.34 +0.8 4,692,092 - PFLU_RS20880 0.34 -0.8 4,692,205 - PFLU_RS20880 0.43 -2.5 4,692,400 + PFLU_RS20880 0.59 -1.0 4,692,400 + PFLU_RS20880 0.59 -1.4 4,692,401 - PFLU_RS20880 0.59 -0.5 4,692,401 - PFLU_RS20880 0.59 +0.5 4,692,401 - PFLU_RS20880 0.59 +0.7 4,692,401 - PFLU_RS20880 0.59 -2.0 4,692,401 - PFLU_RS20880 0.59 -0.5 4,692,406 + PFLU_RS20880 0.59 -0.0 4,692,406 + PFLU_RS20880 0.59 -0.3 4,692,406 + PFLU_RS20880 0.59 -0.8 4,692,406 + PFLU_RS20880 0.59 +0.2 4,692,406 + PFLU_RS20880 0.59 +1.3 4,692,406 + PFLU_RS20880 0.59 -1.5 4,692,406 + PFLU_RS20880 0.59 -0.8 4,692,406 + PFLU_RS20880 0.59 -0.0 4,692,406 + PFLU_RS20880 0.59 -0.3 4,692,406 + PFLU_RS20880 0.59 -0.5 4,692,406 + PFLU_RS20880 0.59 +0.2 4,692,406 + PFLU_RS20880 0.59 +1.4 4,692,406 + PFLU_RS20880 0.59 +0.8 4,692,406 + PFLU_RS20880 0.59 +1.5 4,692,406 + PFLU_RS20880 0.59 -0.6 4,692,406 + PFLU_RS20880 0.59 -0.6 4,692,407 - PFLU_RS20880 0.59 -0.7 4,692,407 - PFLU_RS20880 0.59 -0.6 4,692,407 - PFLU_RS20880 0.59 -2.6 4,692,407 - PFLU_RS20880 0.59 +0.4 4,692,407 - PFLU_RS20880 0.59 -0.0 4,692,407 - PFLU_RS20880 0.59 +1.4 4,692,407 - PFLU_RS20880 0.59 -0.5 4,692,407 - PFLU_RS20880 0.59 +0.1 4,692,407 - PFLU_RS20880 0.59 -1.0 4,692,407 - PFLU_RS20880 0.59 -1.0 4,692,407 - PFLU_RS20880 0.59 -0.8 4,692,493 + PFLU_RS20880 0.66 -0.2 4,692,493 + PFLU_RS20880 0.66 -2.2 4,692,494 - PFLU_RS20880 0.66 -1.3 4,692,494 - PFLU_RS20880 0.66 +0.9
Or see this region's nucleotide sequence