Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17630

Experiment: Ferulic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferulic Acid 2 mM (C)
4,009,477	+				+0.4
4,009,477	+				+1.2
4,009,478	-				+0.8
4,009,487	+				-0.2
4,009,487	+				+0.4
4,009,488	-				-1.4
4,009,488	-				-2.0
4,009,531	+				+0.4
4,009,532	-				+0.2
4,009,613	-		PFLU_RS17620	0.12	-0.6
4,009,702	-		PFLU_RS17620	0.32	+0.7
4,009,759	-		PFLU_RS17620	0.45	+0.4
4,009,767	+		PFLU_RS17620	0.47	-0.1
4,009,767	+		PFLU_RS17620	0.47	-1.8
4,009,767	+		PFLU_RS17620	0.47	+1.0
4,009,768	-		PFLU_RS17620	0.47	+0.0
4,009,768	-		PFLU_RS17620	0.47	-0.4
4,009,863	+		PFLU_RS17620	0.69	+1.6
4,009,863	+		PFLU_RS17620	0.69	+0.3
4,009,863	+		PFLU_RS17620	0.69	+0.8
4,009,863	+		PFLU_RS17620	0.69	-2.2
4,009,863	+		PFLU_RS17620	0.69	-1.3
4,009,863	+		PFLU_RS17620	0.69	+1.2
4,009,863	+		PFLU_RS17620	0.69	+0.8
4,009,864	-		PFLU_RS17620	0.69	+0.1
4,009,864	-		PFLU_RS17620	0.69	+1.6
4,009,864	-		PFLU_RS17620	0.69	+0.0
4,009,864	-		PFLU_RS17620	0.69	+0.8
4,009,864	-		PFLU_RS17620	0.69	+0.2
4,009,864	-		PFLU_RS17620	0.69	+0.3
4,009,864	-		PFLU_RS17620	0.69	-1.6
4,009,864	-		PFLU_RS17620	0.69	+0.4
4,009,985	-				-3.4
4,009,985	-				+0.5
4,010,216	+				+0.0
4,010,217	-				+0.2
4,010,286	+				-0.8
4,010,325	-				+1.4
4,010,335	+				-1.8
4,010,341	-				+2.6
4,010,515	-		PFLU_RS17630	0.18	+0.3
4,010,693	+		PFLU_RS17630	0.49	+2.2
4,010,693	+		PFLU_RS17630	0.49	+0.1
4,010,693	+		PFLU_RS17630	0.49	+2.2
4,010,693	+		PFLU_RS17630	0.49	+0.9
4,010,693	+		PFLU_RS17630	0.49	+0.4
4,010,694	-		PFLU_RS17630	0.49	-2.5
4,010,735	+		PFLU_RS17630	0.57	-1.9
4,010,814	+		PFLU_RS17630	0.71	-0.6
4,010,815	-		PFLU_RS17630	0.71	+3.4
4,010,909	+		PFLU_RS17630	0.88	-0.8
4,010,909	+		PFLU_RS17630	0.88	+0.2
4,010,909	+		PFLU_RS17630	0.88	-1.1
4,010,909	+		PFLU_RS17630	0.88	-2.4
4,010,909	+		PFLU_RS17630	0.88	-2.5
4,010,909	+		PFLU_RS17630	0.88	-0.8
4,010,910	-		PFLU_RS17630	0.88	-1.2
4,010,910	-		PFLU_RS17630	0.88	-1.4
4,010,910	-		PFLU_RS17630	0.88	+1.2
4,010,910	-		PFLU_RS17630	0.88	+0.6
4,011,034	-				+0.2
4,011,034	-				-0.0
4,011,086	+				-0.3
4,011,086	+				+2.8
4,011,101	+				+1.7
4,011,101	+				+0.4
4,011,101	+				+0.2
4,011,112	+				+1.5
4,011,112	+				+0.5
4,011,112	+				+0.4
4,011,112	+				-1.2
4,011,112	+				-0.4
4,011,145	+				+2.5
4,011,145	+				+0.4
4,011,145	+				+0.4
4,011,145	+				-0.1
4,011,146	-				-1.9
4,011,146	-				-2.6
4,011,153	-				-1.2
4,011,153	-				+0.6
4,011,160	-				-1.4
4,011,160	-				-0.4
4,011,160	-				+0.0
4,011,160	-				-1.5
4,011,183	+		PFLU_RS17635	0.15	-1.4
4,011,256	-		PFLU_RS17635	0.51	-1.0
4,011,256	-		PFLU_RS17635	0.51	-1.4
4,011,342	+				+1.2
4,011,342	+				-0.4
4,011,343	-				-1.2
4,011,343	-				-0.4
4,011,343	-				+0.2
4,011,343	-				+0.9
4,011,343	-				+1.2
4,011,343	-				+0.2
4,011,343	-				+0.6
4,011,343	-				-1.0
4,011,343	-				+1.4
4,011,343	-				+2.2
4,011,344	+				-0.4
4,011,344	+				+0.4
4,011,344	+				+3.2
4,011,344	+				+0.3
4,011,344	+				-2.0
4,011,345	-				-0.1
4,011,345	-				-1.1
4,011,345	-				-0.8
4,011,376	+				-0.1
4,011,376	+				-0.3
4,011,377	-				-2.0
4,011,377	-				+0.0
4,011,383	+				-0.8
4,011,383	+				-0.6
4,011,383	+				-1.5
4,011,384	-				-1.5
4,011,384	-				+0.3
4,011,384	-				-0.2
4,011,413	-				-1.6
4,011,539	+				-0.8
4,011,539	+				+1.8
4,011,553	+				+2.7
4,011,554	-				-0.2
4,011,554	-				-2.1
4,011,554	-				-3.2
4,011,554	-				+1.7
4,011,754	+		PFLU_RS17640	0.29	+0.7
4,011,754	+		PFLU_RS17640	0.29	-1.8
4,011,755	-		PFLU_RS17640	0.30	-0.3
4,011,755	-		PFLU_RS17640	0.30	+0.1
4,011,755	-		PFLU_RS17640	0.30	+1.2
4,011,755	-		PFLU_RS17640	0.30	-0.6
4,011,821	+		PFLU_RS17640	0.43	-1.2
4,011,821	+		PFLU_RS17640	0.43	-1.8
4,011,821	+		PFLU_RS17640	0.43	-0.2
4,011,821	+		PFLU_RS17640	0.43	-2.5
4,011,822	-		PFLU_RS17640	0.44	-1.3
4,011,822	-		PFLU_RS17640	0.44	-2.2
4,011,822	-		PFLU_RS17640	0.44	-0.2
4,011,822	-		PFLU_RS17640	0.44	-2.3
4,011,822	-		PFLU_RS17640	0.44	+0.3
4,011,822	-		PFLU_RS17640	0.44	+0.8
4,011,822	-		PFLU_RS17640	0.44	-0.1
4,011,822	-		PFLU_RS17640	0.44	+2.4
4,011,822	-		PFLU_RS17640	0.44	-1.7
4,011,949	+		PFLU_RS17640	0.70	+2.0
4,011,949	+		PFLU_RS17640	0.70	+0.5
4,011,949	+		PFLU_RS17640	0.70	-0.9