Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15230

Experiment: Ferulic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferulic Acid 2 mM (C)
3,412,685	+		PFLU_RS15225	0.41	-0.2
3,412,686	-		PFLU_RS15225	0.41	-2.8
3,412,708	-		PFLU_RS15225	0.42	+2.5
3,412,986	+		PFLU_RS15225	0.61	+0.4
3,412,987	-		PFLU_RS15225	0.61	+0.7
3,413,106	-		PFLU_RS15225	0.69	-0.5
3,413,222	+		PFLU_RS15225	0.77	+0.7
3,413,222	+		PFLU_RS15225	0.77	+0.1
3,413,408	+		PFLU_RS15225	0.90	-1.7
3,413,408	+		PFLU_RS15225	0.90	-0.0
3,413,418	+				-0.9
3,413,418	+				-0.5
3,413,418	+				-0.7
3,413,418	+				-0.3
3,413,419	-				+0.2
3,413,419	-				-1.9
3,413,419	-				-0.0
3,413,501	-				-0.6
3,413,501	-				-0.1
3,413,665	+		PFLU_RS15230	0.16	-0.3
3,413,689	+		PFLU_RS15230	0.20	-1.2
3,413,689	+		PFLU_RS15230	0.20	-1.4
3,413,689	+		PFLU_RS15230	0.20	+0.8
3,413,689	+		PFLU_RS15230	0.20	-1.2
3,413,689	+		PFLU_RS15230	0.20	-0.7
3,413,689	+		PFLU_RS15230	0.20	-0.4
3,413,690	-		PFLU_RS15230	0.20	-0.7
3,413,690	-		PFLU_RS15230	0.20	+2.1
3,413,690	-		PFLU_RS15230	0.20	+2.1
3,413,692	+		PFLU_RS15230	0.20	-1.7
3,413,692	+		PFLU_RS15230	0.20	-0.2
3,413,692	+		PFLU_RS15230	0.20	-1.7
3,413,693	-		PFLU_RS15230	0.20	-0.6
3,413,693	-		PFLU_RS15230	0.20	-2.4
3,413,706	+		PFLU_RS15230	0.22	+1.1
3,413,706	+		PFLU_RS15230	0.22	+1.1
3,413,706	+		PFLU_RS15230	0.22	-0.0
3,413,782	+		PFLU_RS15230	0.33	+0.5
3,413,782	+		PFLU_RS15230	0.33	+0.2
3,413,783	-		PFLU_RS15230	0.33	+1.7
3,413,797	+		PFLU_RS15230	0.36	+0.0
3,413,798	-		PFLU_RS15230	0.36	+0.7
3,413,902	+		PFLU_RS15230	0.51	+0.2
3,413,902	+		PFLU_RS15230	0.51	+0.9
3,413,902	+		PFLU_RS15230	0.51	+2.3
3,413,902	+		PFLU_RS15230	0.51	+3.4
3,413,903	-		PFLU_RS15230	0.51	-0.3
3,413,903	-		PFLU_RS15230	0.51	+0.1
3,413,908	+		PFLU_RS15230	0.52	+2.1
3,413,908	+		PFLU_RS15230	0.52	+0.1
3,413,909	-		PFLU_RS15230	0.52	-0.1
3,413,909	-		PFLU_RS15230	0.52	-2.4
3,413,909	-		PFLU_RS15230	0.52	+0.1
3,414,047	-		PFLU_RS15230	0.73	+1.7
3,414,047	-		PFLU_RS15230	0.73	-1.1
3,414,047	-		PFLU_RS15230	0.73	-1.2
3,414,163	+		PFLU_RS15230	0.90	+0.1
3,414,163	+		PFLU_RS15230	0.90	+0.2
3,414,172	+				-0.5
3,414,172	+				+0.1
3,414,173	-				-0.0
3,414,632	+		PFLU_RS15235	0.51	-0.9
3,414,632	+		PFLU_RS15235	0.51	-0.5
3,414,632	+		PFLU_RS15235	0.51	-0.0
3,414,632	+		PFLU_RS15235	0.51	-2.7
3,414,632	+		PFLU_RS15235	0.51	-0.4
3,414,632	+		PFLU_RS15235	0.51	-1.4
3,414,632	+		PFLU_RS15235	0.51	-0.9
3,414,633	-		PFLU_RS15235	0.51	-0.8
3,414,633	-		PFLU_RS15235	0.51	-0.3
3,414,633	-		PFLU_RS15235	0.51	-1.5
3,414,633	-		PFLU_RS15235	0.51	-0.1
3,414,657	-		PFLU_RS15235	0.54	+0.1
3,414,665	+		PFLU_RS15235	0.55	+0.2
3,414,665	+		PFLU_RS15235	0.55	+0.8
3,414,665	+		PFLU_RS15235	0.55	+1.1
3,414,665	+		PFLU_RS15235	0.55	+0.9
3,414,665	+		PFLU_RS15235	0.55	-0.0
3,414,665	+		PFLU_RS15235	0.55	-0.8
3,414,666	-		PFLU_RS15235	0.55	-1.9
3,414,666	-		PFLU_RS15235	0.55	-1.5
3,414,666	-		PFLU_RS15235	0.55	-0.4
3,414,666	-		PFLU_RS15235	0.55	+0.2
3,414,746	+		PFLU_RS15235	0.65	+0.5
3,414,746	+		PFLU_RS15235	0.65	-1.0
3,414,746	+		PFLU_RS15235	0.65	+1.1
3,414,747	-		PFLU_RS15235	0.65	+0.6
3,414,747	-		PFLU_RS15235	0.65	-0.1
3,414,747	-		PFLU_RS15235	0.65	-2.7
3,414,747	-		PFLU_RS15235	0.65	+0.9
3,414,747	-		PFLU_RS15235	0.65	-1.9
3,414,890	+		PFLU_RS15235	0.83	+1.4
3,414,891	-		PFLU_RS15235	0.83	+0.5
3,414,891	-		PFLU_RS15235	0.83	-0.2
3,414,960	+				+1.1
3,414,960	+				+0.9
3,414,961	-				-0.1
3,414,961	-				-1.7
3,414,961	-				+0.9
3,414,964	+				+0.7
3,414,964	+				-2.7
3,414,981	+				-0.5
3,415,141	+		PFLU_RS15240	0.18	+1.5
3,415,141	+		PFLU_RS15240	0.18	-0.9
3,415,141	+		PFLU_RS15240	0.18	-1.6
3,415,141	+		PFLU_RS15240	0.18	+0.8
3,415,142	-		PFLU_RS15240	0.18	-0.8
3,415,142	-		PFLU_RS15240	0.18	-0.9
3,415,142	-		PFLU_RS15240	0.18	+1.5
3,415,165	-		PFLU_RS15240	0.22	-2.0