Experiment: Ferulic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01385 and PFLU_RS01390 overlap by 4 nucleotides PFLU_RS01390 and PFLU_RS01395 are separated by 66 nucleotides PFLU_RS01395 and PFLU_RS01400 are separated by 26 nucleotides
PFLU_RS01385: PFLU_RS01385 - ADP compounds hydrolase NudE, at 307,891 to 308,457
_RS01385
PFLU_RS01390: PFLU_RS01390 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 308,454 to 309,290
_RS01390
PFLU_RS01395: PFLU_RS01395 - thioesterase, at 309,357 to 309,812
_RS01395
PFLU_RS01400: PFLU_RS01400 - sigma-54-dependent Fis family transcriptional regulator, at 309,839 to 311,215
_RS01400
Position (kb) 309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.410 kb on + strand at 308.411 kb on - strand at 308.411 kb on - strand at 308.411 kb on - strand at 308.448 kb on + strand at 308.470 kb on + strand at 308.470 kb on + strand at 308.470 kb on + strand at 308.470 kb on + strand at 308.471 kb on - strand at 308.471 kb on - strand at 308.527 kb on + strand at 308.528 kb on - strand at 308.535 kb on + strand at 308.809 kb on + strand, within PFLU_RS01390 at 308.809 kb on + strand, within PFLU_RS01390 at 308.809 kb on + strand, within PFLU_RS01390 at 308.810 kb on - strand, within PFLU_RS01390 at 308.810 kb on - strand, within PFLU_RS01390 at 308.810 kb on - strand, within PFLU_RS01390 at 308.810 kb on - strand, within PFLU_RS01390 at 308.810 kb on - strand, within PFLU_RS01390 at 308.810 kb on - strand, within PFLU_RS01390 at 308.847 kb on + strand, within PFLU_RS01390 at 308.847 kb on + strand, within PFLU_RS01390 at 308.847 kb on + strand, within PFLU_RS01390 at 308.847 kb on + strand, within PFLU_RS01390 at 308.848 kb on - strand, within PFLU_RS01390 at 308.848 kb on - strand, within PFLU_RS01390 at 308.946 kb on - strand, within PFLU_RS01390 at 308.946 kb on - strand, within PFLU_RS01390 at 308.946 kb on - strand, within PFLU_RS01390 at 309.038 kb on + strand, within PFLU_RS01390 at 309.038 kb on + strand, within PFLU_RS01390 at 309.038 kb on + strand, within PFLU_RS01390 at 309.038 kb on + strand, within PFLU_RS01390 at 309.039 kb on - strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.040 kb on + strand, within PFLU_RS01390 at 309.041 kb on - strand, within PFLU_RS01390 at 309.041 kb on - strand, within PFLU_RS01390 at 309.041 kb on - strand, within PFLU_RS01390 at 309.041 kb on - strand, within PFLU_RS01390 at 309.041 kb on - strand, within PFLU_RS01390 at 309.041 kb on - strand, within PFLU_RS01390 at 309.288 kb on + strand at 309.289 kb on - strand at 309.289 kb on - strand at 309.289 kb on - strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.373 kb on + strand at 309.374 kb on - strand at 309.374 kb on - strand at 309.374 kb on - strand at 309.374 kb on - strand at 309.374 kb on - strand at 309.374 kb on - strand at 309.383 kb on + strand at 309.383 kb on + strand at 309.383 kb on + strand at 309.455 kb on - strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.463 kb on + strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.464 kb on - strand, within PFLU_RS01395 at 309.544 kb on + strand, within PFLU_RS01395 at 309.544 kb on + strand, within PFLU_RS01395 at 309.545 kb on - strand, within PFLU_RS01395 at 309.572 kb on + strand, within PFLU_RS01395 at 309.572 kb on + strand, within PFLU_RS01395 at 309.572 kb on + strand, within PFLU_RS01395 at 309.646 kb on + strand, within PFLU_RS01395 at 309.647 kb on - strand, within PFLU_RS01395 at 309.759 kb on - strand, within PFLU_RS01395 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.121 kb on + strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.122 kb on - strand, within PFLU_RS01400 at 310.138 kb on + strand, within PFLU_RS01400 at 310.139 kb on - strand, within PFLU_RS01400 at 310.296 kb on + strand, within PFLU_RS01400 at 310.297 kb on - strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.628 kb on - strand, within PFLU_RS01400
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 2 mM (C) remove 308,410 + -0.4 308,411 - -0.1 308,411 - +0.1 308,411 - -1.9 308,448 + +0.3 308,470 + -1.8 308,470 + -1.3 308,470 + +0.3 308,470 + -0.9 308,471 - +1.3 308,471 - -0.1 308,527 + +0.3 308,528 - -0.4 308,535 + -0.6 308,809 + PFLU_RS01390 0.42 +0.9 308,809 + PFLU_RS01390 0.42 -0.7 308,809 + PFLU_RS01390 0.42 -0.7 308,810 - PFLU_RS01390 0.43 -1.6 308,810 - PFLU_RS01390 0.43 -1.9 308,810 - PFLU_RS01390 0.43 +0.3 308,810 - PFLU_RS01390 0.43 -0.9 308,810 - PFLU_RS01390 0.43 -2.3 308,810 - PFLU_RS01390 0.43 -0.9 308,847 + PFLU_RS01390 0.47 +0.9 308,847 + PFLU_RS01390 0.47 -0.7 308,847 + PFLU_RS01390 0.47 -1.4 308,847 + PFLU_RS01390 0.47 -0.7 308,848 - PFLU_RS01390 0.47 +0.6 308,848 - PFLU_RS01390 0.47 -0.1 308,946 - PFLU_RS01390 0.59 -0.1 308,946 - PFLU_RS01390 0.59 -0.9 308,946 - PFLU_RS01390 0.59 -0.1 309,038 + PFLU_RS01390 0.70 -1.7 309,038 + PFLU_RS01390 0.70 -1.1 309,038 + PFLU_RS01390 0.70 +0.9 309,038 + PFLU_RS01390 0.70 -1.0 309,039 - PFLU_RS01390 0.70 -0.3 309,040 + PFLU_RS01390 0.70 -0.5 309,040 + PFLU_RS01390 0.70 -1.1 309,040 + PFLU_RS01390 0.70 -0.4 309,040 + PFLU_RS01390 0.70 +0.0 309,040 + PFLU_RS01390 0.70 +0.9 309,040 + PFLU_RS01390 0.70 -1.6 309,040 + PFLU_RS01390 0.70 -0.7 309,040 + PFLU_RS01390 0.70 -0.8 309,040 + PFLU_RS01390 0.70 +2.3 309,040 + PFLU_RS01390 0.70 +0.7 309,040 + PFLU_RS01390 0.70 +0.3 309,041 - PFLU_RS01390 0.70 -2.1 309,041 - PFLU_RS01390 0.70 -0.7 309,041 - PFLU_RS01390 0.70 +1.2 309,041 - PFLU_RS01390 0.70 +0.3 309,041 - PFLU_RS01390 0.70 -0.9 309,041 - PFLU_RS01390 0.70 -1.5 309,288 + +0.6 309,289 - +0.8 309,289 - +1.1 309,289 - +2.7 309,373 + -0.4 309,373 + -0.2 309,373 + +0.0 309,373 + -0.9 309,373 + +1.3 309,373 + +0.5 309,373 + +1.2 309,373 + -0.9 309,373 + -0.0 309,374 - -1.8 309,374 - -0.4 309,374 - +0.7 309,374 - -0.1 309,374 - +0.3 309,374 - -1.1 309,383 + -0.1 309,383 + +1.3 309,383 + +0.6 309,455 - PFLU_RS01395 0.21 +0.7 309,463 + PFLU_RS01395 0.23 +0.2 309,463 + PFLU_RS01395 0.23 +0.4 309,463 + PFLU_RS01395 0.23 -0.1 309,463 + PFLU_RS01395 0.23 +1.3 309,463 + PFLU_RS01395 0.23 +0.3 309,463 + PFLU_RS01395 0.23 -3.3 309,463 + PFLU_RS01395 0.23 +0.9 309,463 + PFLU_RS01395 0.23 +0.0 309,463 + PFLU_RS01395 0.23 -2.0 309,463 + PFLU_RS01395 0.23 -1.4 309,463 + PFLU_RS01395 0.23 +0.3 309,464 - PFLU_RS01395 0.23 +0.6 309,464 - PFLU_RS01395 0.23 -2.2 309,464 - PFLU_RS01395 0.23 +2.2 309,464 - PFLU_RS01395 0.23 +0.0 309,464 - PFLU_RS01395 0.23 -1.4 309,464 - PFLU_RS01395 0.23 +1.9 309,464 - PFLU_RS01395 0.23 +0.3 309,464 - PFLU_RS01395 0.23 +0.1 309,464 - PFLU_RS01395 0.23 -0.4 309,464 - PFLU_RS01395 0.23 +1.1 309,544 + PFLU_RS01395 0.41 -1.3 309,544 + PFLU_RS01395 0.41 +0.6 309,545 - PFLU_RS01395 0.41 +0.1 309,572 + PFLU_RS01395 0.47 -1.6 309,572 + PFLU_RS01395 0.47 +2.2 309,572 + PFLU_RS01395 0.47 -1.0 309,646 + PFLU_RS01395 0.63 -0.6 309,647 - PFLU_RS01395 0.64 +1.0 309,759 - PFLU_RS01395 0.88 +1.2 310,121 + PFLU_RS01400 0.20 +0.0 310,121 + PFLU_RS01400 0.20 -0.6 310,121 + PFLU_RS01400 0.20 -0.7 310,121 + PFLU_RS01400 0.20 -1.7 310,121 + PFLU_RS01400 0.20 -1.7 310,121 + PFLU_RS01400 0.20 +0.4 310,121 + PFLU_RS01400 0.20 -0.1 310,121 + PFLU_RS01400 0.20 +1.0 310,121 + PFLU_RS01400 0.20 +0.9 310,121 + PFLU_RS01400 0.20 +1.5 310,121 + PFLU_RS01400 0.20 -0.4 310,121 + PFLU_RS01400 0.20 +1.9 310,121 + PFLU_RS01400 0.20 -1.8 310,121 + PFLU_RS01400 0.20 -0.7 310,121 + PFLU_RS01400 0.20 +0.1 310,121 + PFLU_RS01400 0.20 +2.2 310,122 - PFLU_RS01400 0.21 +1.7 310,122 - PFLU_RS01400 0.21 -0.4 310,122 - PFLU_RS01400 0.21 -1.7 310,122 - PFLU_RS01400 0.21 -1.2 310,122 - PFLU_RS01400 0.21 -0.1 310,122 - PFLU_RS01400 0.21 -2.2 310,122 - PFLU_RS01400 0.21 +0.3 310,122 - PFLU_RS01400 0.21 +0.6 310,122 - PFLU_RS01400 0.21 +0.1 310,122 - PFLU_RS01400 0.21 -1.1 310,122 - PFLU_RS01400 0.21 -0.3 310,122 - PFLU_RS01400 0.21 -0.2 310,122 - PFLU_RS01400 0.21 -1.6 310,122 - PFLU_RS01400 0.21 -1.4 310,122 - PFLU_RS01400 0.21 +2.0 310,138 + PFLU_RS01400 0.22 -1.0 310,139 - PFLU_RS01400 0.22 +0.6 310,296 + PFLU_RS01400 0.33 -0.3 310,297 - PFLU_RS01400 0.33 +0.5 310,299 + PFLU_RS01400 0.33 -0.1 310,299 + PFLU_RS01400 0.33 -2.3 310,299 + PFLU_RS01400 0.33 -1.5 310,299 + PFLU_RS01400 0.33 +0.9 310,299 + PFLU_RS01400 0.33 +0.8 310,299 + PFLU_RS01400 0.33 -1.7 310,299 + PFLU_RS01400 0.33 +0.6 310,299 + PFLU_RS01400 0.33 -0.3 310,299 + PFLU_RS01400 0.33 +0.6 310,299 + PFLU_RS01400 0.33 +1.2 310,299 + PFLU_RS01400 0.33 +0.8 310,299 + PFLU_RS01400 0.33 -0.9 310,299 + PFLU_RS01400 0.33 -1.3 310,300 - PFLU_RS01400 0.33 +1.5 310,300 - PFLU_RS01400 0.33 -1.8 310,300 - PFLU_RS01400 0.33 +2.1 310,300 - PFLU_RS01400 0.33 -1.8 310,300 - PFLU_RS01400 0.33 -1.7 310,300 - PFLU_RS01400 0.33 -1.2 310,300 - PFLU_RS01400 0.33 +0.1 310,300 - PFLU_RS01400 0.33 -1.7 310,300 - PFLU_RS01400 0.33 -0.5 310,300 - PFLU_RS01400 0.33 +0.8 310,300 - PFLU_RS01400 0.33 +2.2 310,300 - PFLU_RS01400 0.33 +0.7 310,300 - PFLU_RS01400 0.33 +1.1 310,300 - PFLU_RS01400 0.33 +0.3 310,300 - PFLU_RS01400 0.33 +0.5 310,300 - PFLU_RS01400 0.33 +0.1 310,300 - PFLU_RS01400 0.33 -1.6 310,448 + PFLU_RS01400 0.44 -0.1 310,448 + PFLU_RS01400 0.44 +0.4 310,448 + PFLU_RS01400 0.44 -1.9 310,448 + PFLU_RS01400 0.44 +1.2 310,448 + PFLU_RS01400 0.44 -0.7 310,448 + PFLU_RS01400 0.44 +0.0 310,449 - PFLU_RS01400 0.44 -0.9 310,449 - PFLU_RS01400 0.44 +0.7 310,449 - PFLU_RS01400 0.44 -1.7 310,449 - PFLU_RS01400 0.44 +0.1 310,449 - PFLU_RS01400 0.44 -1.2 310,449 - PFLU_RS01400 0.44 -0.9 310,449 - PFLU_RS01400 0.44 +1.4 310,449 - PFLU_RS01400 0.44 +1.5 310,628 - PFLU_RS01400 0.57 +1.9
Or see this region's nucleotide sequence