Experiment: Ferulic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00650 and PFLU_RS00655 are separated by 99 nucleotides PFLU_RS00655 and PFLU_RS00660 are separated by 52 nucleotides PFLU_RS00660 and PFLU_RS00665 are separated by 224 nucleotides
PFLU_RS00650: PFLU_RS00650 - ABC transporter permease, at 137,273 to 138,121
_RS00650
PFLU_RS00655: PFLU_RS00655 - TonB family protein, at 138,221 to 138,847
_RS00655
PFLU_RS00660: PFLU_RS00660 - LysR family transcriptional regulator, at 138,900 to 139,820
_RS00660
PFLU_RS00665: PFLU_RS00665 - MFS transporter, at 140,045 to 141,580
_RS00665
Position (kb) 138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.975 kb on + strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 137.976 kb on - strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.002 kb on + strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.003 kb on - strand, within PFLU_RS00650 at 138.004 kb on + strand, within PFLU_RS00650 at 138.004 kb on + strand, within PFLU_RS00650 at 138.004 kb on + strand, within PFLU_RS00650 at 138.204 kb on + strand at 138.204 kb on + strand at 138.205 kb on - strand at 138.214 kb on + strand at 138.214 kb on + strand at 138.215 kb on - strand at 138.314 kb on + strand, within PFLU_RS00655 at 138.315 kb on - strand, within PFLU_RS00655 at 138.331 kb on - strand, within PFLU_RS00655 at 138.370 kb on + strand, within PFLU_RS00655 at 138.370 kb on + strand, within PFLU_RS00655 at 138.453 kb on + strand, within PFLU_RS00655 at 138.454 kb on - strand, within PFLU_RS00655 at 138.477 kb on + strand, within PFLU_RS00655 at 138.518 kb on - strand, within PFLU_RS00655 at 138.581 kb on + strand, within PFLU_RS00655 at 138.581 kb on + strand, within PFLU_RS00655 at 138.581 kb on + strand, within PFLU_RS00655 at 138.581 kb on + strand, within PFLU_RS00655 at 138.581 kb on + strand, within PFLU_RS00655 at 138.581 kb on + strand, within PFLU_RS00655 at 138.582 kb on - strand, within PFLU_RS00655 at 138.582 kb on - strand, within PFLU_RS00655 at 138.582 kb on - strand, within PFLU_RS00655 at 138.582 kb on - strand, within PFLU_RS00655 at 138.709 kb on + strand, within PFLU_RS00655 at 138.710 kb on - strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.719 kb on + strand, within PFLU_RS00655 at 138.720 kb on - strand, within PFLU_RS00655 at 138.720 kb on - strand, within PFLU_RS00655 at 138.720 kb on - strand, within PFLU_RS00655 at 138.720 kb on - strand, within PFLU_RS00655 at 138.720 kb on - strand, within PFLU_RS00655 at 138.815 kb on + strand at 138.815 kb on + strand at 138.815 kb on + strand at 138.815 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.839 kb on + strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.840 kb on - strand at 138.845 kb on + strand at 138.908 kb on - strand at 138.908 kb on - strand at 139.085 kb on + strand, within PFLU_RS00660 at 139.222 kb on + strand, within PFLU_RS00660 at 139.222 kb on + strand, within PFLU_RS00660 at 139.223 kb on - strand, within PFLU_RS00660 at 139.223 kb on - strand, within PFLU_RS00660 at 139.223 kb on - strand, within PFLU_RS00660 at 139.223 kb on - strand, within PFLU_RS00660 at 139.225 kb on - strand, within PFLU_RS00660 at 139.336 kb on + strand, within PFLU_RS00660 at 139.336 kb on + strand, within PFLU_RS00660 at 139.336 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.470 kb on + strand, within PFLU_RS00660 at 139.471 kb on - strand, within PFLU_RS00660 at 139.471 kb on - strand, within PFLU_RS00660 at 139.471 kb on - strand, within PFLU_RS00660 at 139.471 kb on - strand, within PFLU_RS00660 at 139.478 kb on + strand, within PFLU_RS00660 at 139.478 kb on + strand, within PFLU_RS00660 at 139.628 kb on + strand, within PFLU_RS00660 at 139.629 kb on - strand, within PFLU_RS00660 at 139.688 kb on + strand, within PFLU_RS00660 at 139.688 kb on + strand, within PFLU_RS00660 at 139.689 kb on - strand, within PFLU_RS00660 at 139.963 kb on + strand at 139.964 kb on - strand at 139.981 kb on - strand at 139.981 kb on - strand at 140.007 kb on + strand at 140.008 kb on - strand at 140.021 kb on - strand at 140.024 kb on + strand at 140.024 kb on + strand at 140.025 kb on - strand at 140.025 kb on - strand at 140.025 kb on - strand at 140.036 kb on + strand at 140.036 kb on + strand at 140.036 kb on + strand at 140.036 kb on + strand at 140.036 kb on + strand at 140.036 kb on + strand at 140.194 kb on - strand at 140.222 kb on + strand, within PFLU_RS00665 at 140.222 kb on + strand, within PFLU_RS00665 at 140.222 kb on + strand, within PFLU_RS00665 at 140.222 kb on + strand, within PFLU_RS00665 at 140.222 kb on + strand, within PFLU_RS00665 at 140.222 kb on + strand, within PFLU_RS00665 at 140.222 kb on + strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.223 kb on - strand, within PFLU_RS00665 at 140.261 kb on + strand, within PFLU_RS00665 at 140.262 kb on - strand, within PFLU_RS00665 at 140.393 kb on + strand, within PFLU_RS00665 at 140.394 kb on - strand, within PFLU_RS00665 at 140.394 kb on - strand, within PFLU_RS00665 at 140.394 kb on - strand, within PFLU_RS00665 at 140.502 kb on - strand, within PFLU_RS00665 at 140.502 kb on - strand, within PFLU_RS00665 at 140.579 kb on + strand, within PFLU_RS00665 at 140.579 kb on + strand, within PFLU_RS00665 at 140.579 kb on + strand, within PFLU_RS00665 at 140.579 kb on + strand, within PFLU_RS00665 at 140.580 kb on - strand, within PFLU_RS00665 at 140.580 kb on - strand, within PFLU_RS00665 at 140.580 kb on - strand, within PFLU_RS00665
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 2 mM (C) remove 137,975 + PFLU_RS00650 0.83 -0.6 137,975 + PFLU_RS00650 0.83 -2.2 137,975 + PFLU_RS00650 0.83 +0.0 137,975 + PFLU_RS00650 0.83 -2.2 137,975 + PFLU_RS00650 0.83 +0.4 137,975 + PFLU_RS00650 0.83 +0.9 137,975 + PFLU_RS00650 0.83 -2.1 137,975 + PFLU_RS00650 0.83 +0.2 137,975 + PFLU_RS00650 0.83 +1.1 137,975 + PFLU_RS00650 0.83 -1.2 137,975 + PFLU_RS00650 0.83 +1.7 137,975 + PFLU_RS00650 0.83 -1.3 137,975 + PFLU_RS00650 0.83 -1.4 137,975 + PFLU_RS00650 0.83 +0.8 137,976 - PFLU_RS00650 0.83 -1.8 137,976 - PFLU_RS00650 0.83 +0.5 137,976 - PFLU_RS00650 0.83 -0.1 137,976 - PFLU_RS00650 0.83 +1.8 137,976 - PFLU_RS00650 0.83 -0.4 137,976 - PFLU_RS00650 0.83 +1.1 137,976 - PFLU_RS00650 0.83 -0.1 137,976 - PFLU_RS00650 0.83 -0.5 137,976 - PFLU_RS00650 0.83 -0.7 137,976 - PFLU_RS00650 0.83 -0.1 138,002 + PFLU_RS00650 0.86 -0.1 138,002 + PFLU_RS00650 0.86 +1.1 138,002 + PFLU_RS00650 0.86 -1.3 138,002 + PFLU_RS00650 0.86 +1.8 138,002 + PFLU_RS00650 0.86 +0.2 138,002 + PFLU_RS00650 0.86 +0.3 138,002 + PFLU_RS00650 0.86 -1.7 138,002 + PFLU_RS00650 0.86 -0.4 138,002 + PFLU_RS00650 0.86 -2.4 138,002 + PFLU_RS00650 0.86 +0.1 138,002 + PFLU_RS00650 0.86 -0.1 138,003 - PFLU_RS00650 0.86 -0.3 138,003 - PFLU_RS00650 0.86 +0.4 138,003 - PFLU_RS00650 0.86 -0.8 138,003 - PFLU_RS00650 0.86 -1.4 138,003 - PFLU_RS00650 0.86 -1.5 138,003 - PFLU_RS00650 0.86 -0.8 138,003 - PFLU_RS00650 0.86 +1.1 138,003 - PFLU_RS00650 0.86 +1.1 138,003 - PFLU_RS00650 0.86 +0.3 138,004 + PFLU_RS00650 0.86 +0.4 138,004 + PFLU_RS00650 0.86 -1.5 138,004 + PFLU_RS00650 0.86 -0.6 138,204 + -1.1 138,204 + +3.3 138,205 - -1.3 138,214 + +1.1 138,214 + +1.8 138,215 - +0.3 138,314 + PFLU_RS00655 0.15 -0.4 138,315 - PFLU_RS00655 0.15 +1.2 138,331 - PFLU_RS00655 0.18 +1.0 138,370 + PFLU_RS00655 0.24 -1.9 138,370 + PFLU_RS00655 0.24 +0.1 138,453 + PFLU_RS00655 0.37 -0.4 138,454 - PFLU_RS00655 0.37 -0.9 138,477 + PFLU_RS00655 0.41 -1.0 138,518 - PFLU_RS00655 0.47 +0.4 138,581 + PFLU_RS00655 0.57 +0.2 138,581 + PFLU_RS00655 0.57 +0.6 138,581 + PFLU_RS00655 0.57 -0.6 138,581 + PFLU_RS00655 0.57 -1.6 138,581 + PFLU_RS00655 0.57 -0.8 138,581 + PFLU_RS00655 0.57 -1.2 138,582 - PFLU_RS00655 0.58 -1.0 138,582 - PFLU_RS00655 0.58 +0.7 138,582 - PFLU_RS00655 0.58 +1.9 138,582 - PFLU_RS00655 0.58 +0.4 138,709 + PFLU_RS00655 0.78 -0.5 138,710 - PFLU_RS00655 0.78 +1.1 138,719 + PFLU_RS00655 0.79 -1.4 138,719 + PFLU_RS00655 0.79 +1.0 138,719 + PFLU_RS00655 0.79 +1.1 138,719 + PFLU_RS00655 0.79 -2.0 138,719 + PFLU_RS00655 0.79 +0.8 138,719 + PFLU_RS00655 0.79 +0.4 138,719 + PFLU_RS00655 0.79 +2.3 138,720 - PFLU_RS00655 0.80 -1.2 138,720 - PFLU_RS00655 0.80 -0.4 138,720 - PFLU_RS00655 0.80 +1.2 138,720 - PFLU_RS00655 0.80 -1.4 138,720 - PFLU_RS00655 0.80 +0.9 138,815 + +0.2 138,815 + -2.1 138,815 + +0.4 138,815 + -1.5 138,839 + -1.6 138,839 + +0.2 138,839 + +0.2 138,839 + +0.3 138,839 + +1.2 138,839 + +0.6 138,840 - -0.8 138,840 - -0.9 138,840 - +0.9 138,840 - -1.5 138,840 - -0.6 138,840 - +0.3 138,840 - -1.0 138,840 - -0.4 138,840 - +0.3 138,845 + +0.4 138,908 - +0.5 138,908 - -1.1 139,085 + PFLU_RS00660 0.20 -0.9 139,222 + PFLU_RS00660 0.35 -0.9 139,222 + PFLU_RS00660 0.35 +0.4 139,223 - PFLU_RS00660 0.35 -0.4 139,223 - PFLU_RS00660 0.35 +0.2 139,223 - PFLU_RS00660 0.35 -3.1 139,223 - PFLU_RS00660 0.35 +1.3 139,225 - PFLU_RS00660 0.35 +0.6 139,336 + PFLU_RS00660 0.47 -1.4 139,336 + PFLU_RS00660 0.47 -1.4 139,336 + PFLU_RS00660 0.47 +0.0 139,470 + PFLU_RS00660 0.62 +0.1 139,470 + PFLU_RS00660 0.62 +0.5 139,470 + PFLU_RS00660 0.62 -0.4 139,470 + PFLU_RS00660 0.62 -0.7 139,470 + PFLU_RS00660 0.62 +0.5 139,470 + PFLU_RS00660 0.62 -0.2 139,470 + PFLU_RS00660 0.62 -0.3 139,470 + PFLU_RS00660 0.62 -2.2 139,471 - PFLU_RS00660 0.62 -1.5 139,471 - PFLU_RS00660 0.62 +0.9 139,471 - PFLU_RS00660 0.62 -0.9 139,471 - PFLU_RS00660 0.62 -0.9 139,478 + PFLU_RS00660 0.63 -0.2 139,478 + PFLU_RS00660 0.63 -0.8 139,628 + PFLU_RS00660 0.79 +0.4 139,629 - PFLU_RS00660 0.79 +0.9 139,688 + PFLU_RS00660 0.86 -0.6 139,688 + PFLU_RS00660 0.86 -1.1 139,689 - PFLU_RS00660 0.86 +1.2 139,963 + +0.6 139,964 - +0.2 139,981 - -1.5 139,981 - +0.4 140,007 + -1.8 140,008 - +2.5 140,021 - -0.9 140,024 + +1.1 140,024 + -0.4 140,025 - +1.9 140,025 - -2.0 140,025 - +0.4 140,036 + +1.7 140,036 + -1.8 140,036 + +0.2 140,036 + -0.2 140,036 + +0.9 140,036 + +0.9 140,194 - -0.1 140,222 + PFLU_RS00665 0.12 -0.1 140,222 + PFLU_RS00665 0.12 +0.5 140,222 + PFLU_RS00665 0.12 -0.4 140,222 + PFLU_RS00665 0.12 -2.2 140,222 + PFLU_RS00665 0.12 -0.2 140,222 + PFLU_RS00665 0.12 -2.8 140,222 + PFLU_RS00665 0.12 -0.9 140,223 - PFLU_RS00665 0.12 -1.6 140,223 - PFLU_RS00665 0.12 +0.5 140,223 - PFLU_RS00665 0.12 -0.5 140,223 - PFLU_RS00665 0.12 +0.1 140,223 - PFLU_RS00665 0.12 -0.6 140,223 - PFLU_RS00665 0.12 +0.2 140,223 - PFLU_RS00665 0.12 +0.4 140,261 + PFLU_RS00665 0.14 +0.1 140,262 - PFLU_RS00665 0.14 -1.4 140,393 + PFLU_RS00665 0.23 -0.9 140,394 - PFLU_RS00665 0.23 +0.2 140,394 - PFLU_RS00665 0.23 +0.3 140,394 - PFLU_RS00665 0.23 -0.6 140,502 - PFLU_RS00665 0.30 -0.1 140,502 - PFLU_RS00665 0.30 +1.3 140,579 + PFLU_RS00665 0.35 -1.1 140,579 + PFLU_RS00665 0.35 +0.4 140,579 + PFLU_RS00665 0.35 -0.6 140,579 + PFLU_RS00665 0.35 -0.3 140,580 - PFLU_RS00665 0.35 -1.6 140,580 - PFLU_RS00665 0.35 +0.9 140,580 - PFLU_RS00665 0.35 -1.9
Or see this region's nucleotide sequence