Experiment: Ferulic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22295 and PFLU_RS22300 are separated by 52 nucleotides PFLU_RS22300 and PFLU_RS22305 are separated by 78 nucleotides PFLU_RS22305 and PFLU_RS22310 are separated by 73 nucleotides
PFLU_RS22295: PFLU_RS22295 - methyl-accepting chemotaxis protein, at 5,015,024 to 5,016,649
_RS22295
PFLU_RS22300: PFLU_RS22300 - EamA family transporter, at 5,016,702 to 5,017,601
_RS22300
PFLU_RS22305: PFLU_RS22305 - CPBP family intramembrane metalloprotease, at 5,017,680 to 5,018,471
_RS22305
PFLU_RS22310: PFLU_RS22310 - methyl-accepting chemotaxis protein, at 5,018,545 to 5,020,110
_RS22310
Position (kb) 5016
5017
5018 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5016.035 kb on + strand, within PFLU_RS22295 at 5016.036 kb on - strand, within PFLU_RS22295 at 5016.036 kb on - strand, within PFLU_RS22295 at 5016.647 kb on + strand at 5016.647 kb on + strand at 5016.647 kb on + strand at 5016.647 kb on + strand at 5016.648 kb on - strand at 5016.648 kb on - strand at 5016.688 kb on + strand at 5016.689 kb on - strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.978 kb on + strand, within PFLU_RS22300 at 5017.018 kb on + strand, within PFLU_RS22300 at 5017.018 kb on + strand, within PFLU_RS22300 at 5017.018 kb on + strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.183 kb on - strand, within PFLU_RS22300 at 5017.183 kb on - strand, within PFLU_RS22300 at 5017.303 kb on - strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.404 kb on + strand, within PFLU_RS22300 at 5017.527 kb on + strand at 5017.527 kb on + strand at 5017.527 kb on + strand at 5017.527 kb on + strand at 5017.528 kb on - strand at 5017.537 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.646 kb on + strand at 5017.646 kb on + strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.648 kb on + strand at 5017.648 kb on + strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.701 kb on + strand at 5017.701 kb on + strand at 5017.701 kb on + strand at 5017.702 kb on - strand at 5017.702 kb on - strand at 5017.726 kb on - strand at 5017.743 kb on + strand at 5017.743 kb on + strand at 5017.744 kb on - strand at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.856 kb on + strand, within PFLU_RS22305 at 5017.857 kb on - strand, within PFLU_RS22305 at 5017.861 kb on + strand, within PFLU_RS22305 at 5017.862 kb on - strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.903 kb on - strand, within PFLU_RS22305 at 5017.903 kb on - strand, within PFLU_RS22305 at 5017.903 kb on - strand, within PFLU_RS22305 at 5017.962 kb on + strand, within PFLU_RS22305 at 5017.962 kb on + strand, within PFLU_RS22305 at 5017.962 kb on + strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.180 kb on - strand, within PFLU_RS22305 at 5018.180 kb on - strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.218 kb on - strand, within PFLU_RS22305 at 5018.218 kb on - strand, within PFLU_RS22305 at 5018.218 kb on - strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.259 kb on + strand, within PFLU_RS22305 at 5018.259 kb on + strand, within PFLU_RS22305 at 5018.259 kb on + strand, within PFLU_RS22305 at 5018.260 kb on - strand, within PFLU_RS22305 at 5018.364 kb on + strand, within PFLU_RS22305 at 5018.365 kb on - strand, within PFLU_RS22305 at 5018.447 kb on + strand at 5018.447 kb on + strand at 5018.448 kb on - strand at 5018.448 kb on - strand at 5018.448 kb on - strand at 5018.452 kb on - strand at 5018.484 kb on + strand at 5018.484 kb on + strand at 5018.485 kb on - strand at 5018.485 kb on - strand at 5018.489 kb on + strand at 5018.550 kb on + strand at 5018.551 kb on - strand at 5018.554 kb on - strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 2 mM (C) remove 5,016,035 + PFLU_RS22295 0.62 +0.7 5,016,036 - PFLU_RS22295 0.62 -1.3 5,016,036 - PFLU_RS22295 0.62 -2.4 5,016,647 + -2.1 5,016,647 + -0.6 5,016,647 + +1.1 5,016,647 + +1.4 5,016,648 - -0.9 5,016,648 - +0.5 5,016,688 + +1.2 5,016,689 - +2.1 5,016,723 + +0.3 5,016,723 + -1.2 5,016,723 + -1.7 5,016,723 + +1.6 5,016,723 + +0.9 5,016,723 + +0.5 5,016,723 + -2.4 5,016,723 + -2.3 5,016,723 + +1.2 5,016,723 + +0.5 5,016,724 - +0.6 5,016,724 - -1.4 5,016,724 - +0.7 5,016,724 - +0.9 5,016,724 - -0.6 5,016,724 - +0.1 5,016,724 - -1.9 5,016,724 - +0.2 5,016,724 - +1.5 5,016,724 - -1.8 5,016,724 - -2.2 5,016,724 - +0.2 5,016,724 - -2.1 5,016,724 - +1.2 5,016,724 - -0.3 5,016,945 + PFLU_RS22300 0.27 -0.6 5,016,945 + PFLU_RS22300 0.27 -0.9 5,016,945 + PFLU_RS22300 0.27 -1.4 5,016,945 + PFLU_RS22300 0.27 -0.8 5,016,945 + PFLU_RS22300 0.27 +0.1 5,016,945 + PFLU_RS22300 0.27 -1.6 5,016,945 + PFLU_RS22300 0.27 +1.7 5,016,945 + PFLU_RS22300 0.27 +0.6 5,016,945 + PFLU_RS22300 0.27 +0.5 5,016,946 - PFLU_RS22300 0.27 -1.9 5,016,946 - PFLU_RS22300 0.27 -1.8 5,016,946 - PFLU_RS22300 0.27 +0.4 5,016,946 - PFLU_RS22300 0.27 -0.6 5,016,946 - PFLU_RS22300 0.27 -0.4 5,016,946 - PFLU_RS22300 0.27 -1.6 5,016,946 - PFLU_RS22300 0.27 +0.6 5,016,946 - PFLU_RS22300 0.27 -2.1 5,016,978 + PFLU_RS22300 0.31 -0.3 5,017,018 + PFLU_RS22300 0.35 -0.3 5,017,018 + PFLU_RS22300 0.35 -1.8 5,017,018 + PFLU_RS22300 0.35 -0.8 5,017,019 - PFLU_RS22300 0.35 -0.7 5,017,019 - PFLU_RS22300 0.35 -2.8 5,017,019 - PFLU_RS22300 0.35 -1.5 5,017,019 - PFLU_RS22300 0.35 -0.2 5,017,183 - PFLU_RS22300 0.53 +0.2 5,017,183 - PFLU_RS22300 0.53 -0.2 5,017,303 - PFLU_RS22300 0.67 -1.1 5,017,395 + PFLU_RS22300 0.77 -1.1 5,017,395 + PFLU_RS22300 0.77 +1.3 5,017,395 + PFLU_RS22300 0.77 -1.0 5,017,395 + PFLU_RS22300 0.77 +0.9 5,017,395 + PFLU_RS22300 0.77 +0.9 5,017,395 + PFLU_RS22300 0.77 +2.1 5,017,395 + PFLU_RS22300 0.77 -0.2 5,017,395 + PFLU_RS22300 0.77 -0.1 5,017,395 + PFLU_RS22300 0.77 -0.2 5,017,396 - PFLU_RS22300 0.77 +0.4 5,017,396 - PFLU_RS22300 0.77 -0.1 5,017,396 - PFLU_RS22300 0.77 +0.2 5,017,396 - PFLU_RS22300 0.77 -1.8 5,017,396 - PFLU_RS22300 0.77 +0.2 5,017,404 + PFLU_RS22300 0.78 +0.5 5,017,527 + +1.2 5,017,527 + +3.1 5,017,527 + +0.6 5,017,527 + -2.2 5,017,528 - -0.5 5,017,537 + -2.3 5,017,567 + -1.8 5,017,567 + -0.2 5,017,567 + +1.8 5,017,567 + +0.2 5,017,567 + -0.5 5,017,567 + +1.3 5,017,567 + +0.9 5,017,567 + -0.6 5,017,568 - +0.4 5,017,568 - +0.4 5,017,568 - -1.4 5,017,568 - -1.1 5,017,568 - +0.0 5,017,568 - +1.3 5,017,568 - -0.0 5,017,646 + -1.1 5,017,646 + +0.8 5,017,647 - -1.6 5,017,647 - +0.8 5,017,647 - +0.7 5,017,647 - -1.2 5,017,647 - +0.1 5,017,647 - +1.6 5,017,648 + +0.5 5,017,648 + -0.1 5,017,649 - +0.0 5,017,649 - +2.1 5,017,649 - -1.1 5,017,649 - -0.9 5,017,649 - -0.1 5,017,649 - +0.1 5,017,649 - -1.6 5,017,649 - -0.7 5,017,649 - -1.8 5,017,701 + -0.1 5,017,701 + -0.1 5,017,701 + -0.0 5,017,702 - +1.2 5,017,702 - -2.2 5,017,726 - -0.7 5,017,743 + -0.2 5,017,743 + +0.1 5,017,744 - +1.1 5,017,820 + PFLU_RS22305 0.18 -0.2 5,017,820 + PFLU_RS22305 0.18 +1.4 5,017,820 + PFLU_RS22305 0.18 -0.6 5,017,820 + PFLU_RS22305 0.18 -1.8 5,017,820 + PFLU_RS22305 0.18 +1.2 5,017,820 + PFLU_RS22305 0.18 +0.8 5,017,820 + PFLU_RS22305 0.18 +1.3 5,017,820 + PFLU_RS22305 0.18 +0.7 5,017,821 - PFLU_RS22305 0.18 +1.5 5,017,821 - PFLU_RS22305 0.18 -0.0 5,017,821 - PFLU_RS22305 0.18 -0.6 5,017,821 - PFLU_RS22305 0.18 -1.9 5,017,821 - PFLU_RS22305 0.18 +1.4 5,017,856 + PFLU_RS22305 0.22 -0.2 5,017,857 - PFLU_RS22305 0.22 -1.1 5,017,861 + PFLU_RS22305 0.23 +0.8 5,017,862 - PFLU_RS22305 0.23 -0.9 5,017,902 + PFLU_RS22305 0.28 +1.0 5,017,902 + PFLU_RS22305 0.28 -0.1 5,017,902 + PFLU_RS22305 0.28 +0.5 5,017,902 + PFLU_RS22305 0.28 -1.5 5,017,903 - PFLU_RS22305 0.28 +0.8 5,017,903 - PFLU_RS22305 0.28 +2.7 5,017,903 - PFLU_RS22305 0.28 +0.3 5,017,962 + PFLU_RS22305 0.36 +2.1 5,017,962 + PFLU_RS22305 0.36 -0.1 5,017,962 + PFLU_RS22305 0.36 -2.5 5,017,963 - PFLU_RS22305 0.36 -2.5 5,017,963 - PFLU_RS22305 0.36 +0.5 5,017,963 - PFLU_RS22305 0.36 +0.4 5,017,963 - PFLU_RS22305 0.36 -0.2 5,018,179 + PFLU_RS22305 0.63 -1.5 5,018,179 + PFLU_RS22305 0.63 +0.6 5,018,179 + PFLU_RS22305 0.63 +0.1 5,018,179 + PFLU_RS22305 0.63 +1.1 5,018,179 + PFLU_RS22305 0.63 -0.4 5,018,180 - PFLU_RS22305 0.63 +0.5 5,018,180 - PFLU_RS22305 0.63 -2.1 5,018,217 + PFLU_RS22305 0.68 -0.5 5,018,217 + PFLU_RS22305 0.68 +0.0 5,018,217 + PFLU_RS22305 0.68 +2.1 5,018,217 + PFLU_RS22305 0.68 +0.7 5,018,217 + PFLU_RS22305 0.68 -1.4 5,018,218 - PFLU_RS22305 0.68 -0.7 5,018,218 - PFLU_RS22305 0.68 +1.9 5,018,218 - PFLU_RS22305 0.68 -0.1 5,018,221 + PFLU_RS22305 0.68 +0.2 5,018,221 + PFLU_RS22305 0.68 -1.5 5,018,221 + PFLU_RS22305 0.68 -1.1 5,018,221 + PFLU_RS22305 0.68 -0.2 5,018,221 + PFLU_RS22305 0.68 -1.1 5,018,221 + PFLU_RS22305 0.68 +1.2 5,018,221 + PFLU_RS22305 0.68 +2.7 5,018,221 + PFLU_RS22305 0.68 +1.1 5,018,221 + PFLU_RS22305 0.68 -0.8 5,018,221 + PFLU_RS22305 0.68 -2.5 5,018,221 + PFLU_RS22305 0.68 +1.6 5,018,221 + PFLU_RS22305 0.68 -1.7 5,018,222 - PFLU_RS22305 0.68 +0.5 5,018,222 - PFLU_RS22305 0.68 +0.1 5,018,222 - PFLU_RS22305 0.68 +0.6 5,018,222 - PFLU_RS22305 0.68 +0.0 5,018,222 - PFLU_RS22305 0.68 -0.9 5,018,222 - PFLU_RS22305 0.68 -0.2 5,018,222 - PFLU_RS22305 0.68 +0.8 5,018,222 - PFLU_RS22305 0.68 -2.8 5,018,222 - PFLU_RS22305 0.68 +0.1 5,018,222 - PFLU_RS22305 0.68 +1.2 5,018,222 - PFLU_RS22305 0.68 -0.9 5,018,222 - PFLU_RS22305 0.68 +0.8 5,018,222 - PFLU_RS22305 0.68 -1.1 5,018,222 - PFLU_RS22305 0.68 +1.3 5,018,259 + PFLU_RS22305 0.73 -1.1 5,018,259 + PFLU_RS22305 0.73 +0.3 5,018,259 + PFLU_RS22305 0.73 +0.3 5,018,260 - PFLU_RS22305 0.73 +0.6 5,018,364 + PFLU_RS22305 0.86 +1.1 5,018,365 - PFLU_RS22305 0.86 +0.1 5,018,447 + +1.3 5,018,447 + +2.1 5,018,448 - +0.8 5,018,448 - +0.5 5,018,448 - +0.4 5,018,452 - +0.0 5,018,484 + +1.7 5,018,484 + +1.3 5,018,485 - +0.2 5,018,485 - +0.3 5,018,489 + -1.2 5,018,550 + +1.5 5,018,551 - -1.9 5,018,554 - -0.7 5,018,580 + -1.4 5,018,580 + -2.0 5,018,580 + -1.0 5,018,580 + -2.4 5,018,581 - -4.7 5,018,581 - -3.0 5,018,581 - -1.8 5,018,581 - -1.2
Or see this region's nucleotide sequence