Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13225

Experiment: Ferulic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferulic Acid 2 mM (C)
2,989,088	+		PFLU_RS13220	0.23	+2.1
2,989,088	+		PFLU_RS13220	0.23	-0.2
2,989,097	+		PFLU_RS13220	0.24	-0.2
2,989,098	-		PFLU_RS13220	0.24	-1.1
2,989,098	-		PFLU_RS13220	0.24	-0.3
2,989,098	-		PFLU_RS13220	0.24	-1.2
2,989,119	+		PFLU_RS13220	0.26	+1.7
2,989,120	-		PFLU_RS13220	0.26	+0.7
2,989,180	-		PFLU_RS13220	0.33	+1.3
2,989,214	+		PFLU_RS13220	0.36	-0.5
2,989,215	-		PFLU_RS13220	0.36	-1.2
2,989,215	-		PFLU_RS13220	0.36	+2.0
2,989,215	-		PFLU_RS13220	0.36	-0.5
2,989,229	+		PFLU_RS13220	0.38	+1.4
2,989,229	+		PFLU_RS13220	0.38	+0.5
2,989,229	+		PFLU_RS13220	0.38	-0.6
2,989,229	+		PFLU_RS13220	0.38	+0.7
2,989,229	+		PFLU_RS13220	0.38	-0.9
2,989,230	-		PFLU_RS13220	0.38	+1.7
2,989,230	-		PFLU_RS13220	0.38	+0.7
2,989,230	-		PFLU_RS13220	0.38	+1.7
2,989,230	-		PFLU_RS13220	0.38	-0.9
2,989,354	+		PFLU_RS13220	0.51	+1.0
2,989,409	+		PFLU_RS13220	0.57	-0.3
2,989,409	+		PFLU_RS13220	0.57	+0.2
2,989,409	+		PFLU_RS13220	0.57	+0.2
2,989,712	+				-1.9
2,989,712	+				+2.4
2,989,712	+				+0.5
2,989,713	-				-1.5
2,989,713	-				-0.5
2,989,713	-				-0.9
2,989,713	-				+0.2
2,989,731	-				-0.8
2,989,832	-				-0.6
2,989,852	+				-2.9
2,989,852	+				-1.2
2,989,852	+				-1.8
2,989,852	+				-1.1
2,989,852	+				-0.7
2,989,853	-				+0.7
2,989,853	-				+1.2
2,989,853	-				+1.7
2,989,853	-				-0.3
2,989,853	-				+0.8
2,989,853	-				-0.7
2,989,863	-				-0.9
2,989,863	-				-0.7
2,989,863	-				-0.2
2,989,868	-				-2.0
2,989,868	-				+1.4
2,989,868	-				+1.2
2,989,868	-				-1.7
2,989,868	-				+1.2
2,989,868	-				-0.9
2,989,926	-				+0.1
2,989,926	-				-0.3
2,989,926	-				-0.9
2,989,926	-				-0.5
2,989,980	+				-1.2
2,990,099	+		PFLU_RS13225	0.20	-0.3
2,990,099	+		PFLU_RS13225	0.20	-0.2
2,990,099	+		PFLU_RS13225	0.20	-1.3
2,990,099	+		PFLU_RS13225	0.20	-2.9
2,990,150	-		PFLU_RS13225	0.31	-0.2
2,990,150	-		PFLU_RS13225	0.31	-1.8
2,990,150	-		PFLU_RS13225	0.31	-1.5
2,990,150	-		PFLU_RS13225	0.31	-0.3
2,990,286	-		PFLU_RS13225	0.61	-1.8
2,990,386	-		PFLU_RS13225	0.82	-1.5
2,990,386	-		PFLU_RS13225	0.82	-0.9
2,990,446	+				-0.1
2,990,446	+				+0.7
2,990,446	+				-1.3
2,990,446	+				-1.3
2,990,447	-				-0.7
2,990,447	-				+2.2
2,990,447	-				+2.4
2,990,447	-				-1.3
2,990,468	+				-1.2
2,990,468	+				-0.3
2,990,469	-				+0.7
2,990,469	-				-0.3
2,990,469	-				+0.4
2,990,480	+				-1.7
2,990,480	+				-0.7
2,990,481	-				+1.9
2,990,481	-				-2.0
2,990,481	-				+0.4
2,990,481	-				-0.7
2,990,481	-				+0.1
2,990,554	+				-0.9
2,990,554	+				-1.3
2,990,554	+				-0.1
2,990,554	+				+0.2
2,990,554	+				+1.7
2,990,554	+				-1.3
2,990,555	-				+0.5
2,990,555	-				-0.9
2,990,555	-				-0.2
2,990,631	+		PFLU_RS13230	0.11	-2.0
2,990,631	+		PFLU_RS13230	0.11	-0.7
2,990,631	+		PFLU_RS13230	0.11	-2.4
2,990,631	+		PFLU_RS13230	0.11	-0.7
2,990,631	+		PFLU_RS13230	0.11	-0.7
2,990,632	-		PFLU_RS13230	0.11	-1.2
2,990,632	-		PFLU_RS13230	0.11	-1.2
2,990,632	-		PFLU_RS13230	0.11	-2.5
2,990,632	-		PFLU_RS13230	0.11	-0.2
2,990,632	-		PFLU_RS13230	0.11	+0.7
2,990,632	-		PFLU_RS13230	0.11	-2.2
2,990,632	-		PFLU_RS13230	0.11	-0.8
2,990,632	-		PFLU_RS13230	0.11	+0.1
2,990,881	-		PFLU_RS13230	0.28	-2.0
2,990,881	-		PFLU_RS13230	0.28	-0.3
2,990,885	+		PFLU_RS13230	0.28	-0.5
2,990,885	+		PFLU_RS13230	0.28	+0.3
2,990,886	-		PFLU_RS13230	0.29	-2.7
2,990,886	-		PFLU_RS13230	0.29	+0.4
2,990,886	-		PFLU_RS13230	0.29	-2.2
2,990,886	-		PFLU_RS13230	0.29	+1.4
2,991,029	+		PFLU_RS13230	0.39	-0.0
2,991,029	+		PFLU_RS13230	0.39	+0.1
2,991,029	+		PFLU_RS13230	0.39	-0.1
2,991,029	+		PFLU_RS13230	0.39	+0.7
2,991,030	-		PFLU_RS13230	0.39	-1.3
2,991,030	-		PFLU_RS13230	0.39	-0.1
2,991,030	-		PFLU_RS13230	0.39	+0.9
2,991,030	-		PFLU_RS13230	0.39	-1.5
2,991,030	-		PFLU_RS13230	0.39	+0.9
2,991,158	+		PFLU_RS13230	0.48	+1.5
2,991,159	-		PFLU_RS13230	0.48	-0.3
2,991,159	-		PFLU_RS13230	0.48	-1.3
2,991,159	-		PFLU_RS13230	0.48	-0.8
2,991,346	-		PFLU_RS13230	0.61	+1.1
2,991,346	-		PFLU_RS13230	0.61	-0.3
2,991,432	+		PFLU_RS13230	0.67	-0.7
2,991,432	+		PFLU_RS13230	0.67	+0.7
2,991,432	+		PFLU_RS13230	0.67	+0.8
2,991,432	+		PFLU_RS13230	0.67	+1.4
2,991,433	-		PFLU_RS13230	0.67	+0.7
2,991,433	-		PFLU_RS13230	0.67	-0.7
2,991,433	-		PFLU_RS13230	0.67	-1.3
2,991,433	-		PFLU_RS13230	0.67	-0.9
2,991,433	-		PFLU_RS13230	0.67	-0.3
2,991,433	-		PFLU_RS13230	0.67	-0.5
2,991,433	-		PFLU_RS13230	0.67	-1.2
2,991,433	-		PFLU_RS13230	0.67	+0.3