Experiment: Ferulic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02105 and PFLU_RS02110 are separated by 33 nucleotides PFLU_RS02110 and PFLU_RS02115 overlap by 11 nucleotides PFLU_RS02115 and PFLU_RS02120 are separated by 44 nucleotides
PFLU_RS02105: PFLU_RS02105 - NAD(P)/FAD-dependent oxidoreductase, at 473,706 to 474,953
_RS02105
PFLU_RS02110: PFLU_RS02110 - MMPL family transporter, at 474,987 to 477,299
_RS02110
PFLU_RS02115: PFLU_RS02115 - outer membrane lipoprotein carrier protein LolA, at 477,289 to 477,942
_RS02115
PFLU_RS02120: PFLU_RS02120 - acyl-CoA thioesterase, at 477,987 to 478,412
_RS02120
Position (kb) 474
475
476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 474.138 kb on - strand, within PFLU_RS02105 at 474.138 kb on - strand, within PFLU_RS02105 at 474.189 kb on - strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.314 kb on + strand, within PFLU_RS02105 at 474.315 kb on - strand, within PFLU_RS02105 at 474.315 kb on - strand, within PFLU_RS02105 at 474.493 kb on + strand, within PFLU_RS02105 at 474.494 kb on - strand, within PFLU_RS02105 at 474.527 kb on - strand, within PFLU_RS02105 at 474.671 kb on + strand, within PFLU_RS02105 at 474.672 kb on - strand, within PFLU_RS02105 at 474.672 kb on - strand, within PFLU_RS02105 at 474.694 kb on + strand, within PFLU_RS02105 at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.852 kb on + strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.853 kb on - strand at 474.978 kb on + strand at 474.990 kb on + strand at 474.990 kb on + strand at 474.990 kb on + strand at 474.990 kb on + strand at 474.991 kb on - strand at 474.991 kb on - strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.028 kb on + strand at 475.029 kb on - strand at 475.029 kb on - strand at 475.070 kb on + strand at 475.195 kb on + strand at 475.196 kb on - strand at 475.196 kb on - strand at 475.704 kb on - strand, within PFLU_RS02110 at 475.704 kb on - strand, within PFLU_RS02110 at 475.704 kb on - strand, within PFLU_RS02110 at 475.768 kb on + strand, within PFLU_RS02110 at 475.769 kb on - strand, within PFLU_RS02110 at 475.983 kb on + strand, within PFLU_RS02110 at 475.983 kb on + strand, within PFLU_RS02110 at 475.984 kb on - strand, within PFLU_RS02110 at 475.984 kb on - strand, within PFLU_RS02110 at 476.155 kb on + strand, within PFLU_RS02110 at 476.155 kb on + strand, within PFLU_RS02110 at 476.155 kb on + strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.156 kb on - strand, within PFLU_RS02110 at 476.234 kb on - strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.335 kb on + strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.336 kb on - strand, within PFLU_RS02110 at 476.382 kb on + strand, within PFLU_RS02110 at 476.382 kb on + strand, within PFLU_RS02110 at 476.382 kb on + strand, within PFLU_RS02110 at 476.402 kb on + strand, within PFLU_RS02110 at 476.402 kb on + strand, within PFLU_RS02110 at 476.403 kb on - strand, within PFLU_RS02110 at 476.403 kb on - strand, within PFLU_RS02110 at 476.403 kb on - strand, within PFLU_RS02110 at 476.584 kb on + strand, within PFLU_RS02110 at 476.584 kb on + strand, within PFLU_RS02110 at 476.715 kb on + strand, within PFLU_RS02110 at 476.715 kb on + strand, within PFLU_RS02110 at 476.715 kb on + strand, within PFLU_RS02110 at 476.716 kb on - strand, within PFLU_RS02110 at 476.716 kb on - strand, within PFLU_RS02110 at 476.716 kb on - strand, within PFLU_RS02110 at 476.808 kb on - strand, within PFLU_RS02110 at 476.883 kb on + strand, within PFLU_RS02110 at 476.883 kb on + strand, within PFLU_RS02110 at 476.883 kb on + strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.884 kb on - strand, within PFLU_RS02110 at 476.915 kb on + strand, within PFLU_RS02110 at 476.915 kb on + strand, within PFLU_RS02110 at 476.915 kb on + strand, within PFLU_RS02110 at 477.052 kb on - strand, within PFLU_RS02110 at 477.052 kb on - strand, within PFLU_RS02110 at 477.837 kb on + strand, within PFLU_RS02115 at 477.837 kb on + strand, within PFLU_RS02115 at 477.837 kb on + strand, within PFLU_RS02115 at 477.838 kb on - strand, within PFLU_RS02115 at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.907 kb on + strand at 477.908 kb on - strand at 477.908 kb on - strand at 477.927 kb on + strand at 477.928 kb on - strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.006 kb on - strand at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.126 kb on + strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.127 kb on - strand, within PFLU_RS02120 at 478.203 kb on + strand, within PFLU_RS02120 at 478.203 kb on + strand, within PFLU_RS02120 at 478.203 kb on + strand, within PFLU_RS02120 at 478.204 kb on - strand, within PFLU_RS02120 at 478.207 kb on + strand, within PFLU_RS02120 at 478.207 kb on + strand, within PFLU_RS02120 at 478.207 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.264 kb on + strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120 at 478.265 kb on - strand, within PFLU_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 2 mM (C) remove 474,138 - PFLU_RS02105 0.35 -0.4 474,138 - PFLU_RS02105 0.35 -1.3 474,189 - PFLU_RS02105 0.39 +0.3 474,314 + PFLU_RS02105 0.49 +0.8 474,314 + PFLU_RS02105 0.49 -0.4 474,314 + PFLU_RS02105 0.49 +0.2 474,314 + PFLU_RS02105 0.49 -0.2 474,314 + PFLU_RS02105 0.49 -2.3 474,314 + PFLU_RS02105 0.49 +1.1 474,315 - PFLU_RS02105 0.49 +0.3 474,315 - PFLU_RS02105 0.49 +0.6 474,493 + PFLU_RS02105 0.63 -0.3 474,494 - PFLU_RS02105 0.63 +0.4 474,527 - PFLU_RS02105 0.66 -1.3 474,671 + PFLU_RS02105 0.77 +1.7 474,672 - PFLU_RS02105 0.77 -1.0 474,672 - PFLU_RS02105 0.77 +0.6 474,694 + PFLU_RS02105 0.79 -1.1 474,852 + +1.8 474,852 + -1.3 474,852 + +0.8 474,852 + +0.1 474,852 + -0.4 474,852 + +0.5 474,852 + +0.0 474,852 + +0.4 474,852 + +0.9 474,852 + +0.5 474,852 + -0.4 474,852 + -1.7 474,852 + -0.6 474,852 + +0.6 474,852 + +2.2 474,852 + +1.0 474,852 + +1.0 474,853 - -1.0 474,853 - +0.7 474,853 - -2.7 474,853 - +0.3 474,853 - -2.8 474,853 - -0.4 474,853 - +0.9 474,853 - +0.4 474,853 - +1.6 474,853 - -0.3 474,853 - +0.8 474,853 - -1.6 474,853 - +1.4 474,853 - +0.4 474,853 - +0.7 474,853 - +0.0 474,853 - -1.2 474,853 - +0.5 474,853 - +1.5 474,853 - -2.1 474,853 - -1.5 474,853 - +1.0 474,853 - +0.6 474,853 - -1.4 474,853 - +0.3 474,978 + -0.6 474,990 + -1.6 474,990 + -0.2 474,990 + +0.8 474,990 + -0.6 474,991 - -1.5 474,991 - +2.0 475,028 + +1.0 475,028 + +0.7 475,028 + +1.1 475,028 + -0.4 475,028 + -1.0 475,029 - -0.2 475,029 - +0.8 475,070 + +1.4 475,195 + -0.2 475,196 - +1.7 475,196 - +2.8 475,704 - PFLU_RS02110 0.31 +1.1 475,704 - PFLU_RS02110 0.31 +1.5 475,704 - PFLU_RS02110 0.31 +1.4 475,768 + PFLU_RS02110 0.34 +0.3 475,769 - PFLU_RS02110 0.34 -0.2 475,983 + PFLU_RS02110 0.43 -1.3 475,983 + PFLU_RS02110 0.43 -0.2 475,984 - PFLU_RS02110 0.43 -0.1 475,984 - PFLU_RS02110 0.43 +0.9 476,155 + PFLU_RS02110 0.50 +0.4 476,155 + PFLU_RS02110 0.50 -0.4 476,155 + PFLU_RS02110 0.50 -1.2 476,156 - PFLU_RS02110 0.51 +1.2 476,156 - PFLU_RS02110 0.51 +0.7 476,156 - PFLU_RS02110 0.51 +0.3 476,156 - PFLU_RS02110 0.51 -0.1 476,156 - PFLU_RS02110 0.51 +1.2 476,156 - PFLU_RS02110 0.51 +0.8 476,156 - PFLU_RS02110 0.51 -1.8 476,156 - PFLU_RS02110 0.51 -0.2 476,156 - PFLU_RS02110 0.51 +0.8 476,234 - PFLU_RS02110 0.54 -0.5 476,335 + PFLU_RS02110 0.58 -0.3 476,335 + PFLU_RS02110 0.58 -0.5 476,335 + PFLU_RS02110 0.58 +0.4 476,335 + PFLU_RS02110 0.58 -2.4 476,335 + PFLU_RS02110 0.58 -1.7 476,335 + PFLU_RS02110 0.58 +3.0 476,335 + PFLU_RS02110 0.58 -1.2 476,335 + PFLU_RS02110 0.58 +1.4 476,335 + PFLU_RS02110 0.58 +0.8 476,335 + PFLU_RS02110 0.58 -1.1 476,335 + PFLU_RS02110 0.58 -1.6 476,335 + PFLU_RS02110 0.58 +1.4 476,336 - PFLU_RS02110 0.58 -1.0 476,336 - PFLU_RS02110 0.58 -0.2 476,336 - PFLU_RS02110 0.58 -1.2 476,336 - PFLU_RS02110 0.58 +1.2 476,336 - PFLU_RS02110 0.58 +2.6 476,336 - PFLU_RS02110 0.58 +0.5 476,382 + PFLU_RS02110 0.60 -0.4 476,382 + PFLU_RS02110 0.60 +1.5 476,382 + PFLU_RS02110 0.60 +0.8 476,402 + PFLU_RS02110 0.61 -2.0 476,402 + PFLU_RS02110 0.61 +2.2 476,403 - PFLU_RS02110 0.61 -0.8 476,403 - PFLU_RS02110 0.61 -1.8 476,403 - PFLU_RS02110 0.61 +0.4 476,584 + PFLU_RS02110 0.69 +0.5 476,584 + PFLU_RS02110 0.69 -0.2 476,715 + PFLU_RS02110 0.75 -1.0 476,715 + PFLU_RS02110 0.75 -0.1 476,715 + PFLU_RS02110 0.75 +2.1 476,716 - PFLU_RS02110 0.75 +1.4 476,716 - PFLU_RS02110 0.75 +1.4 476,716 - PFLU_RS02110 0.75 -0.6 476,808 - PFLU_RS02110 0.79 +0.9 476,883 + PFLU_RS02110 0.82 +0.0 476,883 + PFLU_RS02110 0.82 -0.7 476,883 + PFLU_RS02110 0.82 -0.4 476,884 - PFLU_RS02110 0.82 +1.8 476,884 - PFLU_RS02110 0.82 +1.4 476,884 - PFLU_RS02110 0.82 -1.2 476,884 - PFLU_RS02110 0.82 +1.2 476,884 - PFLU_RS02110 0.82 -0.2 476,915 + PFLU_RS02110 0.83 +0.0 476,915 + PFLU_RS02110 0.83 +0.8 476,915 + PFLU_RS02110 0.83 +1.4 477,052 - PFLU_RS02110 0.89 +0.3 477,052 - PFLU_RS02110 0.89 +0.8 477,837 + PFLU_RS02115 0.84 -1.3 477,837 + PFLU_RS02115 0.84 -2.3 477,837 + PFLU_RS02115 0.84 -0.4 477,838 - PFLU_RS02115 0.84 +0.0 477,907 + +2.2 477,907 + -0.6 477,907 + +1.2 477,907 + +0.1 477,907 + -0.4 477,907 + +0.8 477,908 - -0.4 477,908 - -0.8 477,927 + -0.2 477,928 - -1.0 478,005 + +1.8 478,005 + -0.6 478,005 + -1.4 478,005 + +0.2 478,006 - +0.0 478,126 + PFLU_RS02120 0.33 -0.2 478,126 + PFLU_RS02120 0.33 +1.1 478,126 + PFLU_RS02120 0.33 +0.1 478,126 + PFLU_RS02120 0.33 +0.4 478,126 + PFLU_RS02120 0.33 +1.5 478,126 + PFLU_RS02120 0.33 -0.2 478,127 - PFLU_RS02120 0.33 +0.0 478,127 - PFLU_RS02120 0.33 -1.6 478,127 - PFLU_RS02120 0.33 -1.0 478,127 - PFLU_RS02120 0.33 -0.3 478,127 - PFLU_RS02120 0.33 -1.0 478,127 - PFLU_RS02120 0.33 -1.5 478,127 - PFLU_RS02120 0.33 -1.0 478,203 + PFLU_RS02120 0.51 +0.4 478,203 + PFLU_RS02120 0.51 -2.9 478,203 + PFLU_RS02120 0.51 -1.8 478,204 - PFLU_RS02120 0.51 +0.8 478,207 + PFLU_RS02120 0.52 +0.6 478,207 + PFLU_RS02120 0.52 +1.0 478,207 + PFLU_RS02120 0.52 +0.6 478,264 + PFLU_RS02120 0.65 -2.0 478,264 + PFLU_RS02120 0.65 -0.4 478,264 + PFLU_RS02120 0.65 -0.4 478,264 + PFLU_RS02120 0.65 +0.8 478,264 + PFLU_RS02120 0.65 -0.8 478,264 + PFLU_RS02120 0.65 +0.5 478,264 + PFLU_RS02120 0.65 +1.1 478,264 + PFLU_RS02120 0.65 -0.6 478,265 - PFLU_RS02120 0.65 -1.5 478,265 - PFLU_RS02120 0.65 +1.1 478,265 - PFLU_RS02120 0.65 +2.4 478,265 - PFLU_RS02120 0.65 +0.0 478,265 - PFLU_RS02120 0.65 +0.6 478,265 - PFLU_RS02120 0.65 +0.2 478,265 - PFLU_RS02120 0.65 -1.9 478,265 - PFLU_RS02120 0.65 -1.1 478,265 - PFLU_RS02120 0.65 -0.6 478,265 - PFLU_RS02120 0.65 -1.3
Or see this region's nucleotide sequence