Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS00025

Experiment: propionate 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00020 and PFLU_RS00025 are separated by 104 nucleotidesPFLU_RS00025 and PFLU_RS00030 are separated by 286 nucleotides PFLU_RS00020: PFLU_RS00020 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,777 to 6,194 _RS00020 PFLU_RS00025: PFLU_RS00025 - response regulator transcription factor, at 6,299 to 7,021 _RS00025 PFLU_RS00030: PFLU_RS00030 - hypothetical protein, at 7,308 to 8,240 _RS00030 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 6.201 kb on + strandat 6.201 kb on + strandat 6.202 kb on - strandat 6.202 kb on - strandat 6.245 kb on + strandat 6.246 kb on - strandat 6.252 kb on + strandat 6.253 kb on - strandat 6.253 kb on - strandat 6.267 kb on + strandat 6.268 kb on - strandat 6.268 kb on - strandat 6.329 kb on + strandat 6.330 kb on - strandat 6.348 kb on + strandat 6.348 kb on + strandat 6.349 kb on - strandat 6.349 kb on - strandat 6.349 kb on - strandat 6.394 kb on + strand, within PFLU_RS00025at 6.394 kb on + strand, within PFLU_RS00025at 6.394 kb on + strand, within PFLU_RS00025at 6.409 kb on - strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.412 kb on + strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.413 kb on - strand, within PFLU_RS00025at 6.468 kb on + strand, within PFLU_RS00025at 6.469 kb on - strand, within PFLU_RS00025at 6.469 kb on - strand, within PFLU_RS00025at 6.474 kb on + strand, within PFLU_RS00025at 6.474 kb on + strand, within PFLU_RS00025at 6.474 kb on + strand, within PFLU_RS00025at 6.474 kb on + strand, within PFLU_RS00025at 6.528 kb on + strand, within PFLU_RS00025at 6.528 kb on + strand, within PFLU_RS00025at 6.528 kb on + strand, within PFLU_RS00025at 6.529 kb on - strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.550 kb on + strand, within PFLU_RS00025at 6.551 kb on - strand, within PFLU_RS00025at 6.551 kb on - strand, within PFLU_RS00025at 6.551 kb on - strand, within PFLU_RS00025at 6.551 kb on - strand, within PFLU_RS00025at 6.551 kb on - strand, within PFLU_RS00025at 6.556 kb on + strand, within PFLU_RS00025at 6.614 kb on + strand, within PFLU_RS00025at 6.614 kb on + strand, within PFLU_RS00025at 6.614 kb on + strand, within PFLU_RS00025at 6.614 kb on + strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.615 kb on - strand, within PFLU_RS00025at 6.708 kb on + strand, within PFLU_RS00025at 6.708 kb on + strand, within PFLU_RS00025at 6.708 kb on + strand, within PFLU_RS00025at 6.708 kb on + strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.709 kb on - strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.737 kb on + strand, within PFLU_RS00025at 6.738 kb on - strand, within PFLU_RS00025at 6.738 kb on - strand, within PFLU_RS00025at 6.738 kb on - strand, within PFLU_RS00025at 6.738 kb on - strand, within PFLU_RS00025at 6.832 kb on + strand, within PFLU_RS00025at 6.884 kb on + strand, within PFLU_RS00025at 6.885 kb on - strand, within PFLU_RS00025at 6.885 kb on - strand, within PFLU_RS00025at 6.885 kb on - strand, within PFLU_RS00025at 6.885 kb on - strand, within PFLU_RS00025at 6.885 kb on - strand, within PFLU_RS00025at 6.885 kb on - strand, within PFLU_RS00025at 7.008 kb on - strandat 7.045 kb on + strandat 7.045 kb on + strandat 7.071 kb on + strandat 7.151 kb on - strandat 7.172 kb on + strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.226 kb on + strandat 7.227 kb on - strandat 7.227 kb on - strandat 7.227 kb on - strandat 7.361 kb on - strandat 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.413 kb on + strand, within PFLU_RS00030at 7.414 kb on - strand, within PFLU_RS00030at 7.414 kb on - strand, within PFLU_RS00030at 7.414 kb on - strand, within PFLU_RS00030at 7.414 kb on - strand, within PFLU_RS00030at 7.414 kb on - strand, within PFLU_RS00030at 7.414 kb on - strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.415 kb on + strand, within PFLU_RS00030at 7.416 kb on - strand, within PFLU_RS00030at 7.416 kb on - strand, within PFLU_RS00030at 7.416 kb on - strand, within PFLU_RS00030at 7.416 kb on - strand, within PFLU_RS00030at 7.416 kb on - strand, within PFLU_RS00030at 7.522 kb on + strand, within PFLU_RS00030at 7.522 kb on + strand, within PFLU_RS00030at 7.522 kb on + strand, within PFLU_RS00030at 7.523 kb on - strand, within PFLU_RS00030at 7.523 kb on - strand, within PFLU_RS00030at 7.529 kb on + strand, within PFLU_RS00030at 7.529 kb on + strand, within PFLU_RS00030at 7.529 kb on + strand, within PFLU_RS00030at 7.529 kb on + strand, within PFLU_RS00030at 7.529 kb on + strand, within PFLU_RS00030at 7.530 kb on - strand, within PFLU_RS00030at 7.530 kb on - strand, within PFLU_RS00030at 7.530 kb on - strand, within PFLU_RS00030at 7.530 kb on - strand, within PFLU_RS00030at 7.612 kb on + strand, within PFLU_RS00030at 7.612 kb on + strand, within PFLU_RS00030at 7.612 kb on + strand, within PFLU_RS00030at 7.701 kb on + strand, within PFLU_RS00030at 7.701 kb on + strand, within PFLU_RS00030at 7.701 kb on + strand, within PFLU_RS00030at 7.701 kb on + strand, within PFLU_RS00030at 7.701 kb on + strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.702 kb on - strand, within PFLU_RS00030at 7.857 kb on - strand, within PFLU_RS00030at 7.882 kb on + strand, within PFLU_RS00030at 7.882 kb on + strand, within PFLU_RS00030at 7.883 kb on - strand, within PFLU_RS00030at 7.889 kb on - strand, within PFLU_RS00030at 7.945 kb on + strand, within PFLU_RS00030at 7.946 kb on - strand, within PFLU_RS00030at 8.010 kb on + strand, within PFLU_RS00030at 8.011 kb on - strand, within PFLU_RS00030at 8.011 kb on - strand, within PFLU_RS00030

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate 20 mM (C)
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6,201 + +0.3
6,201 + -2.2
6,202 - -1.0
6,202 - +1.9
6,245 + -2.9
6,246 - -2.1
6,252 + +1.8
6,253 - +3.2
6,253 - -1.4
6,267 + -1.9
6,268 - -0.2
6,268 - +1.2
6,329 + -0.2
6,330 - -2.2
6,348 + +0.9
6,348 + -0.1
6,349 - -1.8
6,349 - -0.4
6,349 - +0.8
6,394 + PFLU_RS00025 0.13 -0.9
6,394 + PFLU_RS00025 0.13 +0.6
6,394 + PFLU_RS00025 0.13 +1.6
6,409 - PFLU_RS00025 0.15 +1.6
6,412 + PFLU_RS00025 0.16 -0.3
6,412 + PFLU_RS00025 0.16 -1.8
6,412 + PFLU_RS00025 0.16 +0.9
6,412 + PFLU_RS00025 0.16 +1.6
6,412 + PFLU_RS00025 0.16 +1.0
6,412 + PFLU_RS00025 0.16 +3.3
6,412 + PFLU_RS00025 0.16 -0.5
6,412 + PFLU_RS00025 0.16 -1.9
6,412 + PFLU_RS00025 0.16 +0.6
6,412 + PFLU_RS00025 0.16 +0.9
6,412 + PFLU_RS00025 0.16 -0.4
6,412 + PFLU_RS00025 0.16 -3.0
6,412 + PFLU_RS00025 0.16 -0.2
6,412 + PFLU_RS00025 0.16 -1.4
6,412 + PFLU_RS00025 0.16 -1.7
6,412 + PFLU_RS00025 0.16 +0.9
6,412 + PFLU_RS00025 0.16 -1.9
6,412 + PFLU_RS00025 0.16 +0.8
6,412 + PFLU_RS00025 0.16 -0.1
6,412 + PFLU_RS00025 0.16 -2.8
6,412 + PFLU_RS00025 0.16 -2.4
6,412 + PFLU_RS00025 0.16 -0.3
6,413 - PFLU_RS00025 0.16 +0.3
6,413 - PFLU_RS00025 0.16 +0.4
6,413 - PFLU_RS00025 0.16 +0.5
6,413 - PFLU_RS00025 0.16 -1.0
6,413 - PFLU_RS00025 0.16 +1.7
6,413 - PFLU_RS00025 0.16 -1.8
6,413 - PFLU_RS00025 0.16 -0.7
6,413 - PFLU_RS00025 0.16 -1.7
6,413 - PFLU_RS00025 0.16 +1.0
6,413 - PFLU_RS00025 0.16 +1.8
6,413 - PFLU_RS00025 0.16 -1.5
6,413 - PFLU_RS00025 0.16 -1.9
6,413 - PFLU_RS00025 0.16 +1.9
6,413 - PFLU_RS00025 0.16 -0.5
6,413 - PFLU_RS00025 0.16 +1.4
6,413 - PFLU_RS00025 0.16 -0.3
6,413 - PFLU_RS00025 0.16 -0.1
6,468 + PFLU_RS00025 0.23 +0.1
6,469 - PFLU_RS00025 0.24 -3.1
6,469 - PFLU_RS00025 0.24 +1.2
6,474 + PFLU_RS00025 0.24 +2.3
6,474 + PFLU_RS00025 0.24 +1.4
6,474 + PFLU_RS00025 0.24 +1.2
6,474 + PFLU_RS00025 0.24 -2.2
6,528 + PFLU_RS00025 0.32 -2.6
6,528 + PFLU_RS00025 0.32 +0.2
6,528 + PFLU_RS00025 0.32 -0.2
6,529 - PFLU_RS00025 0.32 +0.9
6,550 + PFLU_RS00025 0.35 +0.1
6,550 + PFLU_RS00025 0.35 -1.6
6,550 + PFLU_RS00025 0.35 +2.2
6,550 + PFLU_RS00025 0.35 -1.6
6,550 + PFLU_RS00025 0.35 -1.2
6,550 + PFLU_RS00025 0.35 -1.0
6,550 + PFLU_RS00025 0.35 +1.5
6,550 + PFLU_RS00025 0.35 +1.7
6,550 + PFLU_RS00025 0.35 -0.4
6,550 + PFLU_RS00025 0.35 -1.2
6,550 + PFLU_RS00025 0.35 +0.3
6,551 - PFLU_RS00025 0.35 +0.3
6,551 - PFLU_RS00025 0.35 -0.4
6,551 - PFLU_RS00025 0.35 +0.3
6,551 - PFLU_RS00025 0.35 -2.6
6,551 - PFLU_RS00025 0.35 +0.8
6,556 + PFLU_RS00025 0.36 -0.5
6,614 + PFLU_RS00025 0.44 +1.6
6,614 + PFLU_RS00025 0.44 +1.4
6,614 + PFLU_RS00025 0.44 -0.4
6,614 + PFLU_RS00025 0.44 +1.7
6,615 - PFLU_RS00025 0.44 -1.2
6,615 - PFLU_RS00025 0.44 -0.7
6,615 - PFLU_RS00025 0.44 -0.1
6,615 - PFLU_RS00025 0.44 +1.2
6,615 - PFLU_RS00025 0.44 +1.0
6,615 - PFLU_RS00025 0.44 +1.2
6,615 - PFLU_RS00025 0.44 -2.3
6,615 - PFLU_RS00025 0.44 -0.3
6,708 + PFLU_RS00025 0.57 -2.2
6,708 + PFLU_RS00025 0.57 -0.7
6,708 + PFLU_RS00025 0.57 +0.5
6,708 + PFLU_RS00025 0.57 -0.7
6,709 - PFLU_RS00025 0.57 +0.2
6,709 - PFLU_RS00025 0.57 +1.1
6,709 - PFLU_RS00025 0.57 -0.4
6,709 - PFLU_RS00025 0.57 +0.2
6,709 - PFLU_RS00025 0.57 -0.9
6,709 - PFLU_RS00025 0.57 +0.1
6,709 - PFLU_RS00025 0.57 +0.2
6,737 + PFLU_RS00025 0.61 -0.9
6,737 + PFLU_RS00025 0.61 +0.2
6,737 + PFLU_RS00025 0.61 -0.0
6,737 + PFLU_RS00025 0.61 -2.8
6,737 + PFLU_RS00025 0.61 +1.2
6,737 + PFLU_RS00025 0.61 +2.9
6,737 + PFLU_RS00025 0.61 +1.0
6,738 - PFLU_RS00025 0.61 -1.7
6,738 - PFLU_RS00025 0.61 -2.2
6,738 - PFLU_RS00025 0.61 +0.2
6,738 - PFLU_RS00025 0.61 -0.8
6,832 + PFLU_RS00025 0.74 -1.5
6,884 + PFLU_RS00025 0.81 -2.2
6,885 - PFLU_RS00025 0.81 -1.7
6,885 - PFLU_RS00025 0.81 +1.2
6,885 - PFLU_RS00025 0.81 +0.3
6,885 - PFLU_RS00025 0.81 +3.8
6,885 - PFLU_RS00025 0.81 -0.2
6,885 - PFLU_RS00025 0.81 -0.1
7,008 - +2.7
7,045 + +0.6
7,045 + -1.2
7,071 + -1.2
7,151 - -3.1
7,172 + +0.3
7,201 + +0.8
7,201 + -2.0
7,201 + +0.9
7,201 + -0.7
7,202 - +1.6
7,202 - -0.8
7,202 - -2.2
7,226 + +3.1
7,227 - -1.2
7,227 - -2.6
7,227 - -3.0
7,361 - +1.4
7,413 + PFLU_RS00030 0.11 -0.2
7,413 + PFLU_RS00030 0.11 +0.9
7,413 + PFLU_RS00030 0.11 +1.6
7,413 + PFLU_RS00030 0.11 +0.2
7,413 + PFLU_RS00030 0.11 -0.4
7,413 + PFLU_RS00030 0.11 -3.4
7,413 + PFLU_RS00030 0.11 -1.5
7,413 + PFLU_RS00030 0.11 -0.0
7,414 - PFLU_RS00030 0.11 +0.2
7,414 - PFLU_RS00030 0.11 -0.7
7,414 - PFLU_RS00030 0.11 -0.1
7,414 - PFLU_RS00030 0.11 +2.8
7,414 - PFLU_RS00030 0.11 -0.4
7,414 - PFLU_RS00030 0.11 +1.1
7,415 + PFLU_RS00030 0.11 -1.5
7,415 + PFLU_RS00030 0.11 -1.9
7,415 + PFLU_RS00030 0.11 +2.2
7,415 + PFLU_RS00030 0.11 +2.7
7,415 + PFLU_RS00030 0.11 +1.2
7,415 + PFLU_RS00030 0.11 +0.9
7,415 + PFLU_RS00030 0.11 -2.0
7,416 - PFLU_RS00030 0.12 +0.2
7,416 - PFLU_RS00030 0.12 +0.2
7,416 - PFLU_RS00030 0.12 -2.2
7,416 - PFLU_RS00030 0.12 -0.7
7,416 - PFLU_RS00030 0.12 -0.4
7,522 + PFLU_RS00030 0.23 +0.9
7,522 + PFLU_RS00030 0.23 -0.9
7,522 + PFLU_RS00030 0.23 -2.7
7,523 - PFLU_RS00030 0.23 +1.3
7,523 - PFLU_RS00030 0.23 -0.7
7,529 + PFLU_RS00030 0.24 -0.2
7,529 + PFLU_RS00030 0.24 -0.8
7,529 + PFLU_RS00030 0.24 -2.3
7,529 + PFLU_RS00030 0.24 -0.7
7,529 + PFLU_RS00030 0.24 +0.9
7,530 - PFLU_RS00030 0.24 -2.7
7,530 - PFLU_RS00030 0.24 -1.3
7,530 - PFLU_RS00030 0.24 -1.2
7,530 - PFLU_RS00030 0.24 +0.3
7,612 + PFLU_RS00030 0.33 -2.4
7,612 + PFLU_RS00030 0.33 -0.7
7,612 + PFLU_RS00030 0.33 -3.1
7,701 + PFLU_RS00030 0.42 -1.1
7,701 + PFLU_RS00030 0.42 +2.2
7,701 + PFLU_RS00030 0.42 +0.3
7,701 + PFLU_RS00030 0.42 -1.0
7,701 + PFLU_RS00030 0.42 -0.2
7,702 - PFLU_RS00030 0.42 +1.9
7,702 - PFLU_RS00030 0.42 -2.6
7,702 - PFLU_RS00030 0.42 -1.6
7,702 - PFLU_RS00030 0.42 -1.5
7,702 - PFLU_RS00030 0.42 -0.9
7,702 - PFLU_RS00030 0.42 -1.1
7,702 - PFLU_RS00030 0.42 +1.3
7,702 - PFLU_RS00030 0.42 -1.5
7,702 - PFLU_RS00030 0.42 -0.9
7,702 - PFLU_RS00030 0.42 -1.9
7,702 - PFLU_RS00030 0.42 +1.1
7,857 - PFLU_RS00030 0.59 -0.3
7,882 + PFLU_RS00030 0.62 -0.0
7,882 + PFLU_RS00030 0.62 +1.3
7,883 - PFLU_RS00030 0.62 -0.5
7,889 - PFLU_RS00030 0.62 +0.6
7,945 + PFLU_RS00030 0.68 -0.4
7,946 - PFLU_RS00030 0.68 -1.9
8,010 + PFLU_RS00030 0.75 +0.6
8,011 - PFLU_RS00030 0.75 -0.2
8,011 - PFLU_RS00030 0.75 -0.2

Or see this region's nucleotide sequence