Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3310

Experiment: SJC25_Acapsular_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SJC25_Acapsular_0.1MOI
4,247,560	-		BT3309	0.52	+2.0
4,247,565	+		BT3309	0.52	+0.8
4,247,565	+		BT3309	0.52	-1.0
4,247,566	-		BT3309	0.52	-0.8
4,247,567	+		BT3309	0.52	-0.0
4,247,568	-		BT3309	0.52	-0.9
4,247,588	+		BT3309	0.54	-1.9
4,247,598	+		BT3309	0.54	-0.9
4,247,658	+		BT3309	0.58	-2.6
4,247,704	+		BT3309	0.61	+1.5
4,247,705	-		BT3309	0.61	+0.6
4,247,753	+		BT3309	0.64	-0.5
4,247,753	+		BT3309	0.64	-0.0
4,247,840	-		BT3309	0.69	-0.3
4,247,891	+		BT3309	0.72	-1.1
4,247,900	+		BT3309	0.73	+0.6
4,247,910	+		BT3309	0.73	-1.6
4,247,913	-		BT3309	0.73	-0.7
4,247,939	+		BT3309	0.75	-0.4
4,247,939	+		BT3309	0.75	-0.2
4,247,964	+		BT3309	0.76	-0.8
4,247,965	-		BT3309	0.77	-2.4
4,247,978	-		BT3309	0.77	-1.0
4,247,989	+		BT3309	0.78	+0.6
4,248,014	-		BT3309	0.80	-0.4
4,248,017	+		BT3309	0.80	+1.4
4,248,065	-		BT3309	0.83	-0.2
4,248,097	+		BT3309	0.85	-0.3
4,248,173	-		BT3309	0.89	-1.5
4,248,220	+				-0.7
4,248,263	+				+1.3
4,248,263	+				-1.6
4,248,276	+				+0.2
4,248,360	+				-0.8
4,248,396	+				-1.4
4,248,429	+				-0.0
4,248,445	+				-1.4
4,248,502	+				-0.4
4,248,503	-				-0.4
4,248,528	+				-0.1
4,248,528	+				-1.8
4,248,528	+				-1.2
4,248,533	+				-0.0
4,248,534	-				-0.0
4,248,618	+				-0.9
4,248,708	+				-1.8
4,248,708	+				+1.0
4,248,709	-				-1.0
4,248,709	-				+1.7
4,248,714	+				-2.6
4,248,733	+				-0.4
4,248,733	+				+1.0
4,248,761	+				-0.1
4,248,795	+				+2.0
4,248,798	+				-1.0
4,248,806	+				+0.1
4,248,810	+				-1.9
4,248,817	+				+1.3
4,248,818	-				+0.4
4,248,818	-				-0.9
4,248,818	-				-0.1
4,248,892	-		BT3310	0.11	-1.2
4,248,923	-		BT3310	0.12	-0.8
4,248,958	+		BT3310	0.13	+1.3
4,248,973	-		BT3310	0.14	-2.0
4,249,113	+		BT3310	0.18	-0.6
4,249,114	-		BT3310	0.18	-1.0
4,249,116	-		BT3310	0.18	+0.5
4,249,116	-		BT3310	0.18	-0.3
4,249,120	-		BT3310	0.19	-1.0
4,249,211	-		BT3310	0.22	-0.6
4,249,215	-		BT3310	0.22	-0.0
4,249,215	-		BT3310	0.22	-1.4
4,249,352	+		BT3310	0.26	-0.4
4,249,362	+		BT3310	0.27	-2.7
4,249,412	-		BT3310	0.28	+1.6
4,249,435	+		BT3310	0.29	-0.0
4,249,436	-		BT3310	0.29	-1.0
4,249,436	-		BT3310	0.29	+2.0
4,249,465	-		BT3310	0.30	-0.4
4,249,465	-		BT3310	0.30	+2.1
4,249,496	+		BT3310	0.31	+1.2
4,249,551	-		BT3310	0.33	+1.3
4,249,581	-		BT3310	0.34	+2.3
4,249,594	+		BT3310	0.34	+1.0
4,249,594	+		BT3310	0.34	-0.0
4,249,595	-		BT3310	0.34	-0.2
4,249,608	+				+1.0
4,249,618	+		BT3310	0.35	-1.2
4,249,618	+		BT3310	0.35	+0.4
4,249,636	+		BT3310	0.36	+1.6
4,249,689	+		BT3310	0.38	-0.4
4,249,689	+		BT3310	0.38	-0.8
4,249,737	+		BT3310	0.39	+0.8
4,249,754	+		BT3310	0.40	+1.0
4,249,759	+		BT3310	0.40	+1.0
4,249,767	-		BT3310	0.40	-0.2
4,249,868	-		BT3310	0.44	-0.3
4,249,902	+		BT3310	0.45	-0.6
4,249,927	-				+0.2
4,249,934	-		BT3310	0.46	+0.6
4,250,045	-		BT3310	0.49	+1.7
4,250,111	-		BT3310	0.52	-3.0
4,250,111	-		BT3310	0.52	+0.3
4,250,221	+		BT3310	0.55	-2.2
4,250,242	-		BT3310	0.56	+0.8
4,250,242	-		BT3310	0.56	+0.7
4,250,260	+		BT3310	0.57	+4.8
4,250,260	+		BT3310	0.57	-0.9
4,250,264	+		BT3310	0.57	-0.8
4,250,378	-		BT3310	0.60	-1.5
4,250,459	+		BT3310	0.63	+0.6
4,250,460	-		BT3310	0.63	+1.0
4,250,479	+		BT3310	0.64	+1.1
4,250,492	-		BT3310	0.64	-0.8
4,250,492	-		BT3310	0.64	-2.5
4,250,524	+		BT3310	0.65	+1.0
4,250,525	-		BT3310	0.65	+0.5
4,250,525	-		BT3310	0.65	-0.7
4,250,572	-		BT3310	0.67	-0.5
4,250,576	-		BT3310	0.67	-0.4
4,250,576	-		BT3310	0.67	-0.5
4,250,588	-		BT3310	0.67	-1.2
4,250,667	-		BT3310	0.70	-0.8
4,250,669	+		BT3310	0.70	-1.4
4,250,670	-		BT3310	0.70	+1.8
4,250,673	-		BT3310	0.70	-0.3
4,250,704	-		BT3310	0.71	-0.6
4,250,782	+		BT3310	0.74	+0.2
4,250,891	+		BT3310	0.78	+1.6
4,250,913	+		BT3310	0.78	-1.6
4,250,913	+		BT3310	0.78	+0.8
4,250,929	-		BT3310	0.79	+0.3
4,250,975	-		BT3310	0.80	-0.1
4,251,009	+		BT3310	0.81	-1.4
4,251,010	-		BT3310	0.82	+0.8
4,251,038	-		BT3310	0.82	-0.0
4,251,062	+		BT3310	0.83	+0.5
4,251,063	-		BT3310	0.83	-0.9
4,251,063	-		BT3310	0.83	+1.1
4,251,166	+		BT3310	0.87	+0.3
4,251,204	-		BT3310	0.88	+2.0
4,251,204	-		BT3310	0.88	+1.6
4,251,262	-		BT3310	0.90	-0.4
4,251,281	-				-1.8
4,251,302	-				+0.1
4,251,306	-				+1.1
4,251,357	-				-1.0
4,251,357	-				-2.6
4,251,415	+				+1.0
4,251,446	+				-0.4
4,251,514	+				+0.1
4,251,514	+				+1.0
4,251,515	-				-0.3
4,251,536	+				-1.4
4,251,537	-				+0.2
4,251,551	-				-0.0
4,251,587	+				+1.1
4,251,671	-				-0.6
4,251,756	+		BT3311	0.12	-0.0
4,251,761	-		BT3311	0.12	+0.4
4,251,761	-		BT3311	0.12	-1.0
4,251,761	-		BT3311	0.12	-0.5
4,251,761	-		BT3311	0.12	-1.6
4,251,793	+		BT3311	0.14	+1.0
4,251,864	-		BT3311	0.19	-1.4
4,251,967	-		BT3311	0.25	-2.7
4,251,987	+		BT3311	0.27	-0.0
4,252,018	+		BT3311	0.29	-1.8
4,252,019	-		BT3311	0.29	+2.0
4,252,019	-		BT3311	0.29	+1.5
4,252,037	+		BT3311	0.30	-0.6
4,252,038	-		BT3311	0.30	+0.6
4,252,068	-		BT3311	0.32	-0.9
4,252,095	+		BT3311	0.34	-1.0
4,252,096	-		BT3311	0.34	-2.5
4,252,096	-		BT3311	0.34	+0.7
4,252,096	-		BT3311	0.34	-1.6
4,252,103	+		BT3311	0.34	-1.8
4,252,116	+		BT3311	0.35	+0.2
4,252,117	-		BT3311	0.35	-1.1
4,252,128	+		BT3311	0.36	-0.6
4,252,438	-		BT3311	0.56	-1.8