Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18975

Experiment: propionate 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	propionate 20 mM (C)
4,292,167	+		PFLU_RS18970	0.46	+0.0
4,292,167	+		PFLU_RS18970	0.46	-1.7
4,292,168	-		PFLU_RS18970	0.46	-0.2
4,292,168	-		PFLU_RS18970	0.46	-0.5
4,292,275	+		PFLU_RS18970	0.53	-0.5
4,292,275	+		PFLU_RS18970	0.53	+0.8
4,292,276	-		PFLU_RS18970	0.53	+2.0
4,292,276	-		PFLU_RS18970	0.53	+1.3
4,292,294	-		PFLU_RS18970	0.54	+0.3
4,292,294	-		PFLU_RS18970	0.54	+0.8
4,292,294	-		PFLU_RS18970	0.54	+1.3
4,292,578	+		PFLU_RS18970	0.72	+1.3
4,292,578	+		PFLU_RS18970	0.72	+1.8
4,292,578	+		PFLU_RS18970	0.72	+1.4
4,292,579	-		PFLU_RS18970	0.72	+0.8
4,292,579	-		PFLU_RS18970	0.72	+0.6
4,292,579	-		PFLU_RS18970	0.72	-0.7
4,292,652	+		PFLU_RS18970	0.76	-0.2
4,292,652	+		PFLU_RS18970	0.76	-1.5
4,292,653	-		PFLU_RS18970	0.76	-0.9
4,292,689	+		PFLU_RS18970	0.79	+2.3
4,292,689	+		PFLU_RS18970	0.79	+0.6
4,292,689	+		PFLU_RS18970	0.79	+1.0
4,292,689	+		PFLU_RS18970	0.79	+1.0
4,292,689	+		PFLU_RS18970	0.79	+0.6
4,292,689	+		PFLU_RS18970	0.79	+0.3
4,292,690	-		PFLU_RS18970	0.79	-0.5
4,292,690	-		PFLU_RS18970	0.79	-1.5
4,292,690	-		PFLU_RS18970	0.79	-0.6
4,292,690	-		PFLU_RS18970	0.79	+2.2
4,292,690	-		PFLU_RS18970	0.79	+2.0
4,292,711	-		PFLU_RS18970	0.80	-1.6
4,292,878	+				-0.2
4,292,878	+				+0.8
4,292,878	+				+0.8
4,292,878	+				-1.0
4,292,879	-				-1.2
4,292,879	-				+0.3
4,292,899	+				+0.1
4,292,899	+				-0.3
4,292,900	-				+0.9
4,292,900	-				+0.5
4,292,900	-				-1.2
4,292,900	-				-0.6
4,292,900	-				+1.5
4,292,900	-				-0.2
4,292,900	-				+1.7
4,292,902	+				+0.7
4,292,902	+				-0.7
4,292,902	+				+1.8
4,292,902	+				-0.6
4,292,902	+				+2.1
4,292,902	+				+2.3
4,292,902	+				+1.2
4,292,902	+				-1.3
4,292,902	+				-0.3
4,292,902	+				+1.5
4,292,902	+				+2.6
4,292,902	+				+0.4
4,292,903	-				-0.5
4,292,903	-				-0.2
4,292,903	-				-2.5
4,293,031	+				+1.2
4,293,031	+				-1.3
4,293,031	+				+2.5
4,293,032	-				-0.3
4,293,032	-				-1.0
4,293,032	-				-1.0
4,293,032	-				+1.5
4,293,032	-				+2.0
4,293,032	-				+2.3
4,293,032	-				-0.1
4,293,032	-				+1.3
4,293,032	-				-2.8
4,293,111	+				+0.8
4,293,111	+				-1.5
4,293,112	-				-1.3
4,293,286	+		PFLU_RS18975	0.29	+0.0
4,293,287	-		PFLU_RS18975	0.29	+1.0
4,293,287	-		PFLU_RS18975	0.29	+0.7
4,293,287	-		PFLU_RS18975	0.29	+1.2
4,293,287	-		PFLU_RS18975	0.29	+0.4
4,293,331	+		PFLU_RS18975	0.35	-1.0
4,293,331	+		PFLU_RS18975	0.35	+1.3
4,293,331	+		PFLU_RS18975	0.35	-1.0
4,293,331	+		PFLU_RS18975	0.35	-2.3
4,293,331	+		PFLU_RS18975	0.35	+1.4
4,293,331	+		PFLU_RS18975	0.35	+4.4
4,293,331	+		PFLU_RS18975	0.35	-1.6
4,293,331	+		PFLU_RS18975	0.35	+2.8
4,293,331	+		PFLU_RS18975	0.35	-1.6
4,293,331	+		PFLU_RS18975	0.35	-1.0
4,293,331	+		PFLU_RS18975	0.35	-1.3
4,293,331	+		PFLU_RS18975	0.35	-1.0
4,293,332	-		PFLU_RS18975	0.35	+1.2
4,293,332	-		PFLU_RS18975	0.35	-1.0
4,293,332	-		PFLU_RS18975	0.35	+0.1
4,293,332	-		PFLU_RS18975	0.35	+2.5
4,293,332	-		PFLU_RS18975	0.35	-0.2
4,293,332	-		PFLU_RS18975	0.35	+0.2
4,293,332	-		PFLU_RS18975	0.35	+0.8
4,293,332	-		PFLU_RS18975	0.35	-1.0
4,293,332	-		PFLU_RS18975	0.35	-0.8
4,293,332	-		PFLU_RS18975	0.35	+0.3
4,293,332	-		PFLU_RS18975	0.35	+1.8
4,293,332	-		PFLU_RS18975	0.35	+1.7
4,293,332	-		PFLU_RS18975	0.35	+0.7
4,293,332	-		PFLU_RS18975	0.35	-1.5
4,293,332	-		PFLU_RS18975	0.35	-1.6
4,293,368	+		PFLU_RS18975	0.40	-0.7
4,293,369	-		PFLU_RS18975	0.40	+0.8
4,293,385	+		PFLU_RS18975	0.42	+0.3
4,293,385	+		PFLU_RS18975	0.42	-0.2
4,293,386	-		PFLU_RS18975	0.42	+0.1
4,293,386	-		PFLU_RS18975	0.42	+3.1
4,293,386	-		PFLU_RS18975	0.42	+0.8
4,293,386	-		PFLU_RS18975	0.42	+2.3
4,293,464	+		PFLU_RS18975	0.51	-0.5
4,293,464	+		PFLU_RS18975	0.51	-0.9
4,293,464	+		PFLU_RS18975	0.51	-1.6
4,293,464	+		PFLU_RS18975	0.51	-1.2
4,293,465	-		PFLU_RS18975	0.52	+0.8
4,293,465	-		PFLU_RS18975	0.52	+0.0
4,293,465	-		PFLU_RS18975	0.52	+1.7
4,293,465	-		PFLU_RS18975	0.52	-0.0
4,293,465	-		PFLU_RS18975	0.52	+2.6
4,293,465	-		PFLU_RS18975	0.52	+3.1
4,293,465	-		PFLU_RS18975	0.52	+0.7
4,293,465	-		PFLU_RS18975	0.52	-2.1
4,293,465	-		PFLU_RS18975	0.52	+1.3
4,293,584	+		PFLU_RS18975	0.66	-0.7
4,293,584	+		PFLU_RS18975	0.66	-0.7
4,293,584	+		PFLU_RS18975	0.66	+2.0
4,293,584	+		PFLU_RS18975	0.66	-1.3
4,293,584	+		PFLU_RS18975	0.66	+0.6
4,293,584	+		PFLU_RS18975	0.66	-2.2
4,293,584	+		PFLU_RS18975	0.66	+0.7
4,293,584	+		PFLU_RS18975	0.66	-1.5
4,293,584	+		PFLU_RS18975	0.66	+3.8
4,293,584	+		PFLU_RS18975	0.66	-1.3
4,293,584	+		PFLU_RS18975	0.66	+0.5
4,293,585	-		PFLU_RS18975	0.66	+0.8
4,293,585	-		PFLU_RS18975	0.66	-1.0
4,293,585	-		PFLU_RS18975	0.66	+2.6
4,293,585	-		PFLU_RS18975	0.66	-1.0
4,293,585	-		PFLU_RS18975	0.66	+1.1
4,293,585	-		PFLU_RS18975	0.66	+0.9
4,293,604	+		PFLU_RS18975	0.69	+0.3
4,293,604	+		PFLU_RS18975	0.69	-1.5
4,293,605	-		PFLU_RS18975	0.69	+2.2
4,293,743	-		PFLU_RS18975	0.86	+2.1
4,294,035	+				+1.8
4,294,035	+				+2.3
4,294,035	+				+1.4
4,294,035	+				-1.2
4,294,035	+				+2.4
4,294,036	-				+1.8
4,294,036	-				+0.9
4,294,036	-				-1.6
4,294,036	-				+1.5
4,294,036	-				+0.2
4,294,036	-				-1.0
4,294,036	-				-2.2
4,294,036	-				+0.7
4,294,334	+		PFLU_RS18980	0.25	-1.0
4,294,335	-		PFLU_RS18980	0.25	+0.1
4,294,335	-		PFLU_RS18980	0.25	-1.0
4,294,335	-		PFLU_RS18980	0.25	-1.2
4,294,461	+		PFLU_RS18980	0.32	+0.7
4,294,524	+		PFLU_RS18980	0.35	-0.6
4,294,524	+		PFLU_RS18980	0.35	+0.8
4,294,525	-		PFLU_RS18980	0.35	+0.3
4,294,659	+		PFLU_RS18980	0.42	-1.9
4,294,659	+		PFLU_RS18980	0.42	+0.5