Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31800

Experiment: Choline chloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS25260 and PFLU_RS31800 are separated by 79 nucleotidesPFLU_RS31800 and PFLU_RS25265 are separated by 162 nucleotides PFLU_RS25260: PFLU_RS25260 - DUF1302 domain-containing protein, at 5,646,546 to 5,648,336 _RS25260 PFLU_RS31800: PFLU_RS31800 - hypothetical protein, at 5,648,416 to 5,648,658 _RS31800 PFLU_RS25265: PFLU_RS25265 - SDR family oxidoreductase, at 5,648,821 to 5,649,732 _RS25265 Position (kb) 5648 5649Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.576 kb on + strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.577 kb on - strand, within PFLU_RS25260at 5647.663 kb on + strand, within PFLU_RS25260at 5647.663 kb on + strand, within PFLU_RS25260at 5647.663 kb on + strand, within PFLU_RS25260at 5647.663 kb on + strand, within PFLU_RS25260at 5647.664 kb on - strand, within PFLU_RS25260at 5647.664 kb on - strand, within PFLU_RS25260at 5647.664 kb on - strand, within PFLU_RS25260at 5647.664 kb on - strand, within PFLU_RS25260at 5647.802 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.879 kb on + strand, within PFLU_RS25260at 5647.880 kb on - strand, within PFLU_RS25260at 5647.880 kb on - strand, within PFLU_RS25260at 5647.880 kb on - strand, within PFLU_RS25260at 5647.880 kb on - strand, within PFLU_RS25260at 5647.880 kb on - strand, within PFLU_RS25260at 5647.888 kb on + strand, within PFLU_RS25260at 5647.888 kb on + strand, within PFLU_RS25260at 5647.888 kb on + strand, within PFLU_RS25260at 5647.888 kb on + strand, within PFLU_RS25260at 5647.889 kb on - strand, within PFLU_RS25260at 5647.889 kb on - strand, within PFLU_RS25260at 5647.996 kb on + strand, within PFLU_RS25260at 5647.997 kb on - strand, within PFLU_RS25260at 5647.997 kb on - strand, within PFLU_RS25260at 5647.997 kb on - strand, within PFLU_RS25260at 5647.997 kb on - strand, within PFLU_RS25260at 5648.002 kb on + strand, within PFLU_RS25260at 5648.002 kb on + strand, within PFLU_RS25260at 5648.002 kb on + strand, within PFLU_RS25260at 5648.002 kb on + strand, within PFLU_RS25260at 5648.002 kb on + strand, within PFLU_RS25260at 5648.003 kb on - strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.019 kb on + strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.020 kb on - strand, within PFLU_RS25260at 5648.035 kb on + strand, within PFLU_RS25260at 5648.035 kb on + strand, within PFLU_RS25260at 5648.035 kb on + strand, within PFLU_RS25260at 5648.035 kb on + strand, within PFLU_RS25260at 5648.036 kb on - strand, within PFLU_RS25260at 5648.372 kb on + strandat 5648.372 kb on + strandat 5648.372 kb on + strandat 5648.383 kb on - strandat 5648.585 kb on + strand, within PFLU_RS31800at 5648.585 kb on + strand, within PFLU_RS31800at 5648.585 kb on + strand, within PFLU_RS31800at 5648.665 kb on + strandat 5648.665 kb on + strandat 5648.665 kb on + strandat 5648.665 kb on + strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.666 kb on - strandat 5648.703 kb on + strandat 5648.724 kb on + strandat 5648.724 kb on + strandat 5648.725 kb on - strandat 5648.725 kb on - strandat 5648.725 kb on - strandat 5648.824 kb on + strandat 5648.825 kb on - strandat 5648.968 kb on + strand, within PFLU_RS25265at 5648.968 kb on + strand, within PFLU_RS25265at 5648.968 kb on + strand, within PFLU_RS25265at 5648.968 kb on + strand, within PFLU_RS25265at 5648.968 kb on + strand, within PFLU_RS25265at 5648.968 kb on + strand, within PFLU_RS25265at 5648.968 kb on + strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5648.969 kb on - strand, within PFLU_RS25265at 5649.062 kb on + strand, within PFLU_RS25265at 5649.062 kb on + strand, within PFLU_RS25265at 5649.062 kb on + strand, within PFLU_RS25265at 5649.062 kb on + strand, within PFLU_RS25265at 5649.063 kb on - strand, within PFLU_RS25265at 5649.063 kb on - strand, within PFLU_RS25265at 5649.063 kb on - strand, within PFLU_RS25265at 5649.218 kb on + strand, within PFLU_RS25265at 5649.218 kb on + strand, within PFLU_RS25265at 5649.218 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.242 kb on + strand, within PFLU_RS25265at 5649.243 kb on - strand, within PFLU_RS25265at 5649.243 kb on - strand, within PFLU_RS25265at 5649.266 kb on + strand, within PFLU_RS25265at 5649.266 kb on + strand, within PFLU_RS25265at 5649.266 kb on + strand, within PFLU_RS25265at 5649.266 kb on + strand, within PFLU_RS25265at 5649.266 kb on + strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.267 kb on - strand, within PFLU_RS25265at 5649.305 kb on + strand, within PFLU_RS25265at 5649.350 kb on + strand, within PFLU_RS25265at 5649.350 kb on + strand, within PFLU_RS25265at 5649.351 kb on - strand, within PFLU_RS25265at 5649.351 kb on - strand, within PFLU_RS25265

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C)
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5,647,576 + PFLU_RS25260 0.58 -0.6
5,647,576 + PFLU_RS25260 0.58 +0.2
5,647,576 + PFLU_RS25260 0.58 +1.4
5,647,576 + PFLU_RS25260 0.58 -0.1
5,647,576 + PFLU_RS25260 0.58 +0.5
5,647,576 + PFLU_RS25260 0.58 +3.0
5,647,576 + PFLU_RS25260 0.58 +0.2
5,647,576 + PFLU_RS25260 0.58 -0.2
5,647,576 + PFLU_RS25260 0.58 +0.1
5,647,576 + PFLU_RS25260 0.58 -0.1
5,647,576 + PFLU_RS25260 0.58 -0.6
5,647,577 - PFLU_RS25260 0.58 +0.6
5,647,577 - PFLU_RS25260 0.58 -0.8
5,647,577 - PFLU_RS25260 0.58 +0.4
5,647,577 - PFLU_RS25260 0.58 -0.7
5,647,577 - PFLU_RS25260 0.58 -1.2
5,647,577 - PFLU_RS25260 0.58 -2.3
5,647,577 - PFLU_RS25260 0.58 -0.9
5,647,577 - PFLU_RS25260 0.58 -0.1
5,647,577 - PFLU_RS25260 0.58 +0.4
5,647,577 - PFLU_RS25260 0.58 +0.2
5,647,577 - PFLU_RS25260 0.58 +0.4
5,647,663 + PFLU_RS25260 0.62 -0.1
5,647,663 + PFLU_RS25260 0.62 -2.0
5,647,663 + PFLU_RS25260 0.62 -1.8
5,647,663 + PFLU_RS25260 0.62 +1.0
5,647,664 - PFLU_RS25260 0.62 +1.0
5,647,664 - PFLU_RS25260 0.62 -0.0
5,647,664 - PFLU_RS25260 0.62 -0.8
5,647,664 - PFLU_RS25260 0.62 -1.2
5,647,802 + PFLU_RS25260 0.70 -0.4
5,647,879 + PFLU_RS25260 0.74 -1.2
5,647,879 + PFLU_RS25260 0.74 -0.3
5,647,879 + PFLU_RS25260 0.74 -0.2
5,647,879 + PFLU_RS25260 0.74 -0.2
5,647,879 + PFLU_RS25260 0.74 -0.9
5,647,879 + PFLU_RS25260 0.74 -0.5
5,647,879 + PFLU_RS25260 0.74 +0.7
5,647,880 - PFLU_RS25260 0.74 -0.2
5,647,880 - PFLU_RS25260 0.74 -1.3
5,647,880 - PFLU_RS25260 0.74 +0.7
5,647,880 - PFLU_RS25260 0.74 -0.3
5,647,880 - PFLU_RS25260 0.74 +0.3
5,647,888 + PFLU_RS25260 0.75 +0.3
5,647,888 + PFLU_RS25260 0.75 -2.0
5,647,888 + PFLU_RS25260 0.75 -0.1
5,647,888 + PFLU_RS25260 0.75 -0.4
5,647,889 - PFLU_RS25260 0.75 -0.4
5,647,889 - PFLU_RS25260 0.75 +0.9
5,647,996 + PFLU_RS25260 0.81 +0.4
5,647,997 - PFLU_RS25260 0.81 +0.1
5,647,997 - PFLU_RS25260 0.81 -0.0
5,647,997 - PFLU_RS25260 0.81 -0.2
5,647,997 - PFLU_RS25260 0.81 +0.8
5,648,002 + PFLU_RS25260 0.81 +1.7
5,648,002 + PFLU_RS25260 0.81 -0.4
5,648,002 + PFLU_RS25260 0.81 +0.3
5,648,002 + PFLU_RS25260 0.81 -1.0
5,648,002 + PFLU_RS25260 0.81 -0.9
5,648,003 - PFLU_RS25260 0.81 +0.8
5,648,019 + PFLU_RS25260 0.82 +0.4
5,648,019 + PFLU_RS25260 0.82 +0.8
5,648,019 + PFLU_RS25260 0.82 +0.9
5,648,019 + PFLU_RS25260 0.82 +1.4
5,648,019 + PFLU_RS25260 0.82 -1.0
5,648,019 + PFLU_RS25260 0.82 +0.4
5,648,019 + PFLU_RS25260 0.82 +0.8
5,648,020 - PFLU_RS25260 0.82 +1.2
5,648,020 - PFLU_RS25260 0.82 -0.3
5,648,020 - PFLU_RS25260 0.82 +0.0
5,648,020 - PFLU_RS25260 0.82 -1.4
5,648,020 - PFLU_RS25260 0.82 +0.6
5,648,020 - PFLU_RS25260 0.82 -0.2
5,648,020 - PFLU_RS25260 0.82 -0.3
5,648,035 + PFLU_RS25260 0.83 -0.4
5,648,035 + PFLU_RS25260 0.83 -0.5
5,648,035 + PFLU_RS25260 0.83 -0.2
5,648,035 + PFLU_RS25260 0.83 -2.5
5,648,036 - PFLU_RS25260 0.83 +1.1
5,648,372 + +2.3
5,648,372 + +0.6
5,648,372 + +1.0
5,648,383 - -1.2
5,648,585 + PFLU_RS31800 0.70 -1.8
5,648,585 + PFLU_RS31800 0.70 +0.7
5,648,585 + PFLU_RS31800 0.70 -0.9
5,648,665 + -0.4
5,648,665 + -1.2
5,648,665 + +1.1
5,648,665 + +1.0
5,648,666 - -1.1
5,648,666 - +0.2
5,648,666 - +0.1
5,648,666 - -0.2
5,648,666 - +0.0
5,648,666 - +0.4
5,648,666 - -0.1
5,648,666 - +0.2
5,648,703 + +0.2
5,648,724 + +0.4
5,648,724 + +0.4
5,648,725 - -1.4
5,648,725 - +0.3
5,648,725 - +0.2
5,648,824 + +1.6
5,648,825 - -0.4
5,648,968 + PFLU_RS25265 0.16 -2.1
5,648,968 + PFLU_RS25265 0.16 +2.4
5,648,968 + PFLU_RS25265 0.16 +0.7
5,648,968 + PFLU_RS25265 0.16 -0.8
5,648,968 + PFLU_RS25265 0.16 +0.5
5,648,968 + PFLU_RS25265 0.16 -0.2
5,648,968 + PFLU_RS25265 0.16 -1.2
5,648,969 - PFLU_RS25265 0.16 +1.2
5,648,969 - PFLU_RS25265 0.16 +0.3
5,648,969 - PFLU_RS25265 0.16 +1.1
5,648,969 - PFLU_RS25265 0.16 +0.1
5,648,969 - PFLU_RS25265 0.16 +0.2
5,648,969 - PFLU_RS25265 0.16 -1.3
5,648,969 - PFLU_RS25265 0.16 -0.9
5,648,969 - PFLU_RS25265 0.16 +0.0
5,648,969 - PFLU_RS25265 0.16 +0.5
5,649,062 + PFLU_RS25265 0.26 +1.4
5,649,062 + PFLU_RS25265 0.26 -0.0
5,649,062 + PFLU_RS25265 0.26 +0.1
5,649,062 + PFLU_RS25265 0.26 +0.6
5,649,063 - PFLU_RS25265 0.27 -1.4
5,649,063 - PFLU_RS25265 0.27 +0.2
5,649,063 - PFLU_RS25265 0.27 -0.9
5,649,218 + PFLU_RS25265 0.44 +1.6
5,649,218 + PFLU_RS25265 0.44 +0.8
5,649,218 + PFLU_RS25265 0.44 +0.4
5,649,242 + PFLU_RS25265 0.46 -0.9
5,649,242 + PFLU_RS25265 0.46 +0.3
5,649,242 + PFLU_RS25265 0.46 +0.5
5,649,242 + PFLU_RS25265 0.46 -2.5
5,649,242 + PFLU_RS25265 0.46 -0.8
5,649,242 + PFLU_RS25265 0.46 -1.5
5,649,242 + PFLU_RS25265 0.46 +0.4
5,649,242 + PFLU_RS25265 0.46 +0.7
5,649,243 - PFLU_RS25265 0.46 -0.1
5,649,243 - PFLU_RS25265 0.46 +1.4
5,649,266 + PFLU_RS25265 0.49 -1.0
5,649,266 + PFLU_RS25265 0.49 -0.9
5,649,266 + PFLU_RS25265 0.49 +1.9
5,649,266 + PFLU_RS25265 0.49 -0.2
5,649,266 + PFLU_RS25265 0.49 +0.7
5,649,267 - PFLU_RS25265 0.49 +1.4
5,649,267 - PFLU_RS25265 0.49 +0.4
5,649,267 - PFLU_RS25265 0.49 -0.6
5,649,267 - PFLU_RS25265 0.49 +1.0
5,649,267 - PFLU_RS25265 0.49 +0.4
5,649,267 - PFLU_RS25265 0.49 -1.2
5,649,267 - PFLU_RS25265 0.49 +0.7
5,649,267 - PFLU_RS25265 0.49 +0.2
5,649,305 + PFLU_RS25265 0.53 -0.3
5,649,350 + PFLU_RS25265 0.58 -1.1
5,649,350 + PFLU_RS25265 0.58 +0.2
5,649,351 - PFLU_RS25265 0.58 -3.0
5,649,351 - PFLU_RS25265 0.58 +1.4

Or see this region's nucleotide sequence