Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25200

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
5,630,157	-		PFLU_RS25195	0.23	-0.8
5,630,222	+		PFLU_RS25195	0.29	+0.3
5,630,320	+		PFLU_RS25195	0.38	-0.8
5,630,320	+		PFLU_RS25195	0.38	+0.2
5,630,320	+		PFLU_RS25195	0.38	+0.9
5,630,321	-		PFLU_RS25195	0.38	-0.9
5,630,406	-		PFLU_RS25195	0.46	+1.0
5,630,407	+		PFLU_RS25195	0.46	-1.8
5,630,407	+		PFLU_RS25195	0.46	+1.4
5,630,407	+		PFLU_RS25195	0.46	-0.9
5,630,407	+		PFLU_RS25195	0.46	+0.5
5,630,407	+		PFLU_RS25195	0.46	+0.3
5,630,407	+		PFLU_RS25195	0.46	-1.0
5,630,407	+		PFLU_RS25195	0.46	+0.4
5,630,407	+		PFLU_RS25195	0.46	+0.4
5,630,407	+		PFLU_RS25195	0.46	+0.8
5,630,407	+		PFLU_RS25195	0.46	+0.4
5,630,407	+		PFLU_RS25195	0.46	-1.8
5,630,407	+		PFLU_RS25195	0.46	+2.7
5,630,407	+		PFLU_RS25195	0.46	-1.0
5,630,407	+		PFLU_RS25195	0.46	+0.0
5,630,408	-		PFLU_RS25195	0.46	+0.4
5,630,408	-		PFLU_RS25195	0.46	-1.6
5,630,408	-		PFLU_RS25195	0.46	+0.4
5,630,408	-		PFLU_RS25195	0.46	-0.6
5,630,408	-		PFLU_RS25195	0.46	+0.4
5,630,408	-		PFLU_RS25195	0.46	+0.4
5,630,408	-		PFLU_RS25195	0.46	+0.0
5,630,408	-		PFLU_RS25195	0.46	+0.4
5,630,408	-		PFLU_RS25195	0.46	-0.1
5,630,408	-		PFLU_RS25195	0.46	-0.3
5,630,408	-		PFLU_RS25195	0.46	+1.4
5,630,408	-		PFLU_RS25195	0.46	-2.6
5,630,444	+		PFLU_RS25195	0.49	+1.1
5,630,515	+		PFLU_RS25195	0.56	+0.0
5,630,515	+		PFLU_RS25195	0.56	-0.1
5,630,515	+		PFLU_RS25195	0.56	+0.4
5,630,516	-		PFLU_RS25195	0.56	+1.3
5,630,516	-		PFLU_RS25195	0.56	+0.4
5,630,638	+		PFLU_RS25195	0.67	+0.4
5,630,639	-		PFLU_RS25195	0.67	+0.2
5,630,655	+		PFLU_RS25195	0.69	-1.9
5,630,782	+		PFLU_RS25195	0.80	-0.6
5,630,782	+		PFLU_RS25195	0.80	+0.6
5,630,782	+		PFLU_RS25195	0.80	+0.4
5,630,782	+		PFLU_RS25195	0.80	-1.1
5,630,782	+		PFLU_RS25195	0.80	+0.3
5,630,782	+		PFLU_RS25195	0.80	-1.1
5,630,783	-		PFLU_RS25195	0.80	-0.6
5,630,783	-		PFLU_RS25195	0.80	+0.1
5,630,783	-		PFLU_RS25195	0.80	-0.9
5,630,783	-		PFLU_RS25195	0.80	-0.1
5,630,783	-		PFLU_RS25195	0.80	-0.1
5,630,783	-		PFLU_RS25195	0.80	+0.2
5,630,783	-		PFLU_RS25195	0.80	+0.5
5,630,783	-		PFLU_RS25195	0.80	-0.0
5,630,783	-		PFLU_RS25195	0.80	-0.8
5,630,783	-		PFLU_RS25195	0.80	+1.1
5,630,783	-		PFLU_RS25195	0.80	-0.6
5,630,783	-		PFLU_RS25195	0.80	+0.1
5,630,795	-		PFLU_RS25195	0.82	-0.8
5,630,795	-		PFLU_RS25195	0.82	-0.1
5,630,801	-		PFLU_RS25195	0.82	+0.1
5,630,875	+		PFLU_RS25195	0.89	-0.9
5,630,875	+		PFLU_RS25195	0.89	+0.3
5,630,875	+		PFLU_RS25195	0.89	+0.1
5,630,876	-		PFLU_RS25195	0.89	-1.3
5,630,876	-		PFLU_RS25195	0.89	+0.1
5,630,876	-		PFLU_RS25195	0.89	+0.4
5,630,891	+				+1.7
5,630,892	-				+0.6
5,630,892	-				-0.1
5,630,892	-				-0.0
5,630,996	+				-2.6
5,630,996	+				+0.7
5,630,996	+				+1.4
5,630,997	-				+3.0
5,631,002	+				-0.0
5,631,002	+				-0.2
5,631,002	+				-1.6
5,631,002	+				+0.2
5,631,002	+				+0.6
5,631,003	-				+0.3
5,631,011	+				-2.4
5,631,011	+				+0.6
5,631,011	+				+0.3
5,631,012	-				-0.1
5,631,012	-				+0.1
5,631,023	+				+0.2
5,631,023	+				+0.4
5,631,023	+				-1.4
5,631,023	+				+0.6
5,631,024	-				+0.9
5,631,024	-				-0.1
5,631,025	+				-0.5
5,631,025	+				+1.1
5,631,025	+				-0.7
5,631,025	+				-1.0
5,631,025	+				-0.1
5,631,025	+				+0.3
5,631,025	+				-0.5
5,631,025	+				+0.1
5,631,025	+				+0.4
5,631,026	-				+1.0
5,631,026	-				-0.4
5,631,026	-				+0.4
5,631,026	-				+0.4
5,631,026	-				-0.8
5,631,026	-				+1.0
5,631,026	-				-1.1
5,631,026	-				+1.0
5,631,026	-				+1.4
5,631,026	-				+0.9
5,631,026	-				+1.4
5,631,026	-				-1.2
5,631,053	+				+0.2
5,631,074	-				-0.1
5,631,090	-				-0.9
5,631,090	-				+0.8
5,631,090	-				-2.1
5,631,166	+				-0.4
5,631,166	+				+0.8
5,631,166	+				-0.2
5,631,166	+				+0.0
5,631,166	+				-0.5
5,631,166	+				-0.5
5,631,167	-				-0.0
5,631,167	-				+1.4
5,631,167	-				-0.8
5,631,167	-				+0.3
5,631,167	-				+0.9
5,631,167	-				+0.6
5,631,167	-				-1.2
5,631,167	-				-0.4
5,631,167	-				-0.4
5,631,289	+		PFLU_RS25200	0.15	-1.2
5,631,290	-		PFLU_RS25200	0.15	-0.9
5,631,307	+		PFLU_RS25200	0.17	-1.1
5,631,307	+		PFLU_RS25200	0.17	-0.9
5,631,307	+		PFLU_RS25200	0.17	+0.7
5,631,307	+		PFLU_RS25200	0.17	+0.1
5,631,307	+		PFLU_RS25200	0.17	+3.0
5,631,307	+		PFLU_RS25200	0.17	-1.2
5,631,308	-		PFLU_RS25200	0.17	-0.2
5,631,308	-		PFLU_RS25200	0.17	-0.6
5,631,308	-		PFLU_RS25200	0.17	-1.1
5,631,308	-		PFLU_RS25200	0.17	-2.3
5,631,308	-		PFLU_RS25200	0.17	-2.4
5,631,308	-		PFLU_RS25200	0.17	-1.4
5,631,316	+		PFLU_RS25200	0.18	-0.9
5,631,316	+		PFLU_RS25200	0.18	-0.9
5,631,316	+		PFLU_RS25200	0.18	-1.2
5,631,316	+		PFLU_RS25200	0.18	+0.1
5,631,316	+		PFLU_RS25200	0.18	+0.8
5,631,316	+		PFLU_RS25200	0.18	+0.4
5,631,316	+		PFLU_RS25200	0.18	-0.0
5,631,316	+		PFLU_RS25200	0.18	-1.1
5,631,316	+		PFLU_RS25200	0.18	-0.9
5,631,317	-		PFLU_RS25200	0.18	-1.4
5,631,317	-		PFLU_RS25200	0.18	-1.2
5,631,346	+		PFLU_RS25200	0.21	-0.6
5,631,346	+		PFLU_RS25200	0.21	-1.2
5,631,347	-		PFLU_RS25200	0.22	-1.2
5,631,347	-		PFLU_RS25200	0.22	-0.9
5,631,347	-		PFLU_RS25200	0.22	-3.4
5,631,409	+		PFLU_RS25200	0.28	+0.9
5,631,409	+		PFLU_RS25200	0.28	-1.2
5,631,410	-		PFLU_RS25200	0.29	-1.2
5,631,410	-		PFLU_RS25200	0.29	-0.2
5,631,410	-		PFLU_RS25200	0.29	-1.4
5,631,410	-		PFLU_RS25200	0.29	-0.1
5,631,410	-		PFLU_RS25200	0.29	-1.4
5,631,481	+		PFLU_RS25200	0.37	-0.2
5,631,481	+		PFLU_RS25200	0.37	-2.1
5,631,482	-		PFLU_RS25200	0.37	+0.6
5,631,511	+		PFLU_RS25200	0.40	-2.1
5,631,512	-		PFLU_RS25200	0.40	-1.2
5,631,575	+		PFLU_RS25200	0.47	+1.4
5,631,575	+		PFLU_RS25200	0.47	+2.0
5,631,576	-		PFLU_RS25200	0.47	-0.8
5,631,576	-		PFLU_RS25200	0.47	+1.0
5,631,576	-		PFLU_RS25200	0.47	+0.4
5,631,576	-		PFLU_RS25200	0.47	+0.8
5,631,576	-		PFLU_RS25200	0.47	-2.5
5,631,592	+		PFLU_RS25200	0.49	-0.6
5,631,592	+		PFLU_RS25200	0.49	-2.4
5,631,592	+		PFLU_RS25200	0.49	+0.2
5,631,592	+		PFLU_RS25200	0.49	-0.6
5,631,593	-		PFLU_RS25200	0.49	-1.2
5,631,593	-		PFLU_RS25200	0.49	+3.0
5,631,593	-		PFLU_RS25200	0.49	-1.2
5,631,593	-		PFLU_RS25200	0.49	-1.4
5,631,593	-		PFLU_RS25200	0.49	+1.4
5,631,593	-		PFLU_RS25200	0.49	+0.8
5,631,665	-		PFLU_RS25200	0.57	-1.4
5,631,674	-		PFLU_RS25200	0.58	-0.9
5,631,685	+		PFLU_RS25200	0.60	-0.8
5,631,685	+		PFLU_RS25200	0.60	-1.2
5,631,685	+		PFLU_RS25200	0.60	-0.6
5,631,685	+		PFLU_RS25200	0.60	+0.1
5,631,685	+		PFLU_RS25200	0.60	+1.1
5,631,685	+		PFLU_RS25200	0.60	-0.6
5,631,686	-		PFLU_RS25200	0.60	-0.2
5,631,686	-		PFLU_RS25200	0.60	+1.4
5,631,686	-		PFLU_RS25200	0.60	+0.1
5,631,686	-		PFLU_RS25200	0.60	-0.6
5,631,686	-		PFLU_RS25200	0.60	-1.4
5,631,686	-		PFLU_RS25200	0.60	-1.8
5,631,879	+		PFLU_RS25200	0.81	-0.2
5,631,879	+		PFLU_RS25200	0.81	-1.9
5,631,879	+		PFLU_RS25200	0.81	-1.6
5,631,879	+		PFLU_RS25200	0.81	-1.2
5,631,880	-		PFLU_RS25200	0.82	-2.7
5,631,880	-		PFLU_RS25200	0.82	-1.4
5,631,880	-		PFLU_RS25200	0.82	+0.4
5,631,880	-		PFLU_RS25200	0.82	+0.1
5,631,880	-		PFLU_RS25200	0.82	+0.6
5,631,880	-		PFLU_RS25200	0.82	-2.5
5,631,880	-		PFLU_RS25200	0.82	-1.6
5,631,895	-		PFLU_RS25200	0.83	+0.8
5,631,895	-		PFLU_RS25200	0.83	+0.6
5,631,895	-		PFLU_RS25200	0.83	+0.4
5,631,908	+		PFLU_RS25200	0.85	-1.4
5,631,909	-		PFLU_RS25200	0.85	-0.8
5,631,909	-		PFLU_RS25200	0.85	+0.1
5,632,051	+				+0.4
5,632,051	+				+1.2
5,632,051	+				-1.4
5,632,052	-				+0.4
5,632,075	+				-1.8
5,632,075	+				-1.8
5,632,075	+				-1.4
5,632,075	+				-0.6
5,632,075	+				-0.6
5,632,075	+				-1.1
5,632,075	+				-1.6
5,632,075	+				-1.9
5,632,076	-				+0.4
5,632,076	-				-0.9
5,632,076	-				-1.4
5,632,076	-				-2.1
5,632,076	-				-0.5
5,632,076	-				-2.2
5,632,076	-				-0.9
5,632,124	+		PFLU_RS25205	0.20	-0.9
5,632,124	+		PFLU_RS25205	0.20	-0.9
5,632,124	+		PFLU_RS25205	0.20	+0.4
5,632,125	-		PFLU_RS25205	0.20	-1.6
5,632,125	-		PFLU_RS25205	0.20	-1.4
5,632,127	+		PFLU_RS25205	0.21	+1.4
5,632,128	-		PFLU_RS25205	0.21	+0.4
5,632,128	-		PFLU_RS25205	0.21	-0.4
5,632,128	-		PFLU_RS25205	0.21	+1.1
5,632,128	-		PFLU_RS25205	0.21	-0.4
5,632,171	+		PFLU_RS25205	0.34	-0.9
5,632,195	-		PFLU_RS25205	0.41	-0.9
5,632,195	-		PFLU_RS25205	0.41	+0.4
5,632,195	-		PFLU_RS25205	0.41	-1.9
5,632,195	-		PFLU_RS25205	0.41	-0.2
5,632,195	-		PFLU_RS25205	0.41	-1.2
5,632,195	-		PFLU_RS25205	0.41	-0.9
5,632,195	-		PFLU_RS25205	0.41	-1.2
5,632,195	-		PFLU_RS25205	0.41	-1.6
5,632,272	+		PFLU_RS25205	0.63	-1.2
5,632,272	+		PFLU_RS25205	0.63	-0.2
5,632,272	+		PFLU_RS25205	0.63	-0.2
5,632,273	-		PFLU_RS25205	0.64	-2.1
5,632,273	-		PFLU_RS25205	0.64	+1.4
5,632,273	-		PFLU_RS25205	0.64	-0.2
5,632,273	-		PFLU_RS25205	0.64	-3.3
5,632,332	+		PFLU_RS25205	0.81	-2.2
5,632,332	+		PFLU_RS25205	0.81	-0.6
5,632,332	+		PFLU_RS25205	0.81	+0.4
5,632,332	+		PFLU_RS25205	0.81	-0.9
5,632,333	-		PFLU_RS25205	0.81	-2.3
5,632,333	-		PFLU_RS25205	0.81	-0.4
5,632,333	-		PFLU_RS25205	0.81	+0.1
5,632,333	-		PFLU_RS25205	0.81	-1.2
5,632,339	+		PFLU_RS25205	0.83	-1.2
5,632,340	-		PFLU_RS25205	0.83	-2.6
5,632,340	-		PFLU_RS25205	0.83	-0.6
5,632,340	-		PFLU_RS25205	0.83	-1.6
5,632,340	-		PFLU_RS25205	0.83	-0.2
5,632,390	+				+2.0
5,632,390	+				-1.6
5,632,398	-				-0.6
5,632,398	-				+0.2
5,632,415	+				+0.4
5,632,415	+				+1.1
5,632,416	-				-0.2
5,632,526	+		PFLU_RS25210	0.21	-1.4
5,632,526	+		PFLU_RS25210	0.21	+1.4
5,632,526	+		PFLU_RS25210	0.21	-1.6
5,632,526	+		PFLU_RS25210	0.21	+0.4
5,632,526	+		PFLU_RS25210	0.21	-0.6
5,632,527	-		PFLU_RS25210	0.21	+1.0
5,632,527	-		PFLU_RS25210	0.21	+0.6
5,632,527	-		PFLU_RS25210	0.21	-0.2
5,632,527	-		PFLU_RS25210	0.21	-1.6
5,632,527	-		PFLU_RS25210	0.21	-1.4
5,632,527	-		PFLU_RS25210	0.21	-0.6
5,632,527	-		PFLU_RS25210	0.21	-0.9
5,632,527	-		PFLU_RS25210	0.21	-1.9
5,632,527	-		PFLU_RS25210	0.21	+0.8
5,632,561	+		PFLU_RS25210	0.26	-0.6
5,632,717	+		PFLU_RS25210	0.51	-0.6
5,632,718	-		PFLU_RS25210	0.51	+1.4
5,632,739	+		PFLU_RS25210	0.55	-0.9
5,632,739	+		PFLU_RS25210	0.55	-0.9
5,632,739	+		PFLU_RS25210	0.55	-0.6
5,632,739	+		PFLU_RS25210	0.55	+0.4
5,632,739	+		PFLU_RS25210	0.55	-0.9
5,632,739	+		PFLU_RS25210	0.55	-2.7
5,632,739	+		PFLU_RS25210	0.55	-0.6
5,632,740	-		PFLU_RS25210	0.55	-0.1
5,632,740	-		PFLU_RS25210	0.55	+1.4
5,632,740	-		PFLU_RS25210	0.55	-0.9
5,632,740	-		PFLU_RS25210	0.55	-0.9
5,632,740	-		PFLU_RS25210	0.55	-0.6
5,632,763	+		PFLU_RS25210	0.59	-1.2
5,632,763	+		PFLU_RS25210	0.59	-0.9
5,632,763	+		PFLU_RS25210	0.59	-0.6
5,632,764	-		PFLU_RS25210	0.59	-0.6
5,632,808	+		PFLU_RS25210	0.66	-0.8
5,632,809	-		PFLU_RS25210	0.66	-1.6
5,632,849	+		PFLU_RS25210	0.72	-0.4
5,632,850	-		PFLU_RS25210	0.72	-0.2
5,632,858	+		PFLU_RS25210	0.74	-1.8
5,632,858	+		PFLU_RS25210	0.74	-1.2
5,632,859	-		PFLU_RS25210	0.74	+0.4
5,632,871	+		PFLU_RS25210	0.76	+1.0
5,632,871	+		PFLU_RS25210	0.76	-0.2
5,632,871	+		PFLU_RS25210	0.76	-2.7
5,632,916	+		PFLU_RS25210	0.83	+1.4
5,632,916	+		PFLU_RS25210	0.83	-1.8
5,632,917	-		PFLU_RS25210	0.83	-1.6
5,633,012	-				-0.6
5,633,012	-				-1.3
5,633,027	+				-2.2
5,633,027	+				-2.6
5,633,027	+				-0.2
5,633,028	-				-1.6
5,633,028	-				-0.2