Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23065

Experiment: Choline chloride 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS23060 and PFLU_RS23065 are separated by 126 nucleotidesPFLU_RS23065 and PFLU_RS23070 are separated by 4 nucleotidesPFLU_RS23070 and PFLU_RS23075 are separated by 13 nucleotidesPFLU_RS23075 and PFLU_RS23080 are separated by 105 nucleotides PFLU_RS23060: PFLU_RS23060 - ACP S-malonyltransferase, at 5,181,771 to 5,182,709 _RS23060 PFLU_RS23065: PFLU_RS23065 - phosphate acyltransferase PlsX, at 5,182,836 to 5,183,846 _RS23065 PFLU_RS23070: PFLU_RS23070 - 50S ribosomal protein L32, at 5,183,851 to 5,184,033 _RS23070 PFLU_RS23075: PFLU_RS23075 - hypothetical protein, at 5,184,047 to 5,184,577 _RS23075 PFLU_RS23080: PFLU_RS23080 - septum formation inhibitor Maf, at 5,184,683 to 5,185,261 _RS23080 Position (kb) 5182 5183 5184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5182.723 kb on - strandat 5182.754 kb on - strandat 5182.813 kb on + strandat 5182.813 kb on + strandat 5182.813 kb on + strandat 5182.813 kb on + strandat 5182.813 kb on + strandat 5182.813 kb on + strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.814 kb on - strandat 5182.994 kb on + strand, within PFLU_RS23065at 5182.995 kb on - strand, within PFLU_RS23065at 5182.995 kb on - strand, within PFLU_RS23065at 5183.144 kb on + strand, within PFLU_RS23065at 5183.145 kb on - strand, within PFLU_RS23065at 5183.145 kb on - strand, within PFLU_RS23065at 5183.191 kb on + strand, within PFLU_RS23065at 5183.191 kb on + strand, within PFLU_RS23065at 5183.191 kb on + strand, within PFLU_RS23065at 5183.191 kb on + strand, within PFLU_RS23065at 5183.191 kb on + strand, within PFLU_RS23065at 5183.191 kb on + strand, within PFLU_RS23065at 5183.192 kb on - strand, within PFLU_RS23065at 5183.192 kb on - strand, within PFLU_RS23065at 5183.192 kb on - strand, within PFLU_RS23065at 5183.192 kb on - strand, within PFLU_RS23065at 5183.192 kb on - strand, within PFLU_RS23065at 5183.211 kb on - strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.221 kb on + strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.222 kb on - strand, within PFLU_RS23065at 5183.428 kb on + strand, within PFLU_RS23065at 5183.428 kb on + strand, within PFLU_RS23065at 5183.497 kb on + strand, within PFLU_RS23065at 5183.497 kb on + strand, within PFLU_RS23065at 5183.497 kb on + strand, within PFLU_RS23065at 5183.498 kb on - strand, within PFLU_RS23065at 5183.498 kb on - strand, within PFLU_RS23065at 5183.498 kb on - strand, within PFLU_RS23065at 5183.498 kb on - strand, within PFLU_RS23065at 5183.529 kb on - strand, within PFLU_RS23065at 5183.660 kb on + strand, within PFLU_RS23065at 5183.660 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.715 kb on + strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.716 kb on - strand, within PFLU_RS23065at 5183.824 kb on - strandat 5183.836 kb on - strandat 5183.836 kb on - strandat 5183.836 kb on - strandat 5183.881 kb on - strand, within PFLU_RS23070at 5183.881 kb on - strand, within PFLU_RS23070at 5184.069 kb on - strandat 5184.069 kb on - strandat 5184.081 kb on - strandat 5184.081 kb on - strandat 5184.081 kb on - strandat 5184.105 kb on - strand, within PFLU_RS23075at 5184.578 kb on - strandat 5184.578 kb on - strandat 5184.693 kb on + strandat 5184.693 kb on + strandat 5184.693 kb on + strandat 5184.693 kb on + strandat 5184.693 kb on + strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.694 kb on - strandat 5184.696 kb on + strandat 5184.696 kb on + strandat 5184.696 kb on + strandat 5184.697 kb on - strandat 5184.697 kb on - strandat 5184.716 kb on + strandat 5184.791 kb on - strand, within PFLU_RS23080at 5184.791 kb on - strand, within PFLU_RS23080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C)
remove
5,182,723 - -0.6
5,182,754 - +0.7
5,182,813 + -1.4
5,182,813 + -0.5
5,182,813 + -0.7
5,182,813 + -1.1
5,182,813 + -0.7
5,182,813 + -0.8
5,182,814 - +2.4
5,182,814 - +0.9
5,182,814 - +0.3
5,182,814 - -1.3
5,182,814 - -0.2
5,182,814 - +1.0
5,182,814 - -0.4
5,182,814 - -1.6
5,182,814 - -0.2
5,182,994 + PFLU_RS23065 0.16 +0.2
5,182,995 - PFLU_RS23065 0.16 -1.1
5,182,995 - PFLU_RS23065 0.16 -0.9
5,183,144 + PFLU_RS23065 0.30 +0.8
5,183,145 - PFLU_RS23065 0.31 -0.4
5,183,145 - PFLU_RS23065 0.31 -2.1
5,183,191 + PFLU_RS23065 0.35 -0.4
5,183,191 + PFLU_RS23065 0.35 +0.1
5,183,191 + PFLU_RS23065 0.35 -1.1
5,183,191 + PFLU_RS23065 0.35 -0.6
5,183,191 + PFLU_RS23065 0.35 +1.2
5,183,191 + PFLU_RS23065 0.35 -1.5
5,183,192 - PFLU_RS23065 0.35 -1.0
5,183,192 - PFLU_RS23065 0.35 +0.1
5,183,192 - PFLU_RS23065 0.35 -2.4
5,183,192 - PFLU_RS23065 0.35 -2.8
5,183,192 - PFLU_RS23065 0.35 +0.6
5,183,211 - PFLU_RS23065 0.37 -2.4
5,183,221 + PFLU_RS23065 0.38 -1.4
5,183,221 + PFLU_RS23065 0.38 -0.9
5,183,221 + PFLU_RS23065 0.38 -0.4
5,183,221 + PFLU_RS23065 0.38 -0.3
5,183,221 + PFLU_RS23065 0.38 -0.8
5,183,221 + PFLU_RS23065 0.38 -2.0
5,183,221 + PFLU_RS23065 0.38 +0.4
5,183,221 + PFLU_RS23065 0.38 -0.4
5,183,222 - PFLU_RS23065 0.38 -1.1
5,183,222 - PFLU_RS23065 0.38 -2.8
5,183,222 - PFLU_RS23065 0.38 -0.4
5,183,222 - PFLU_RS23065 0.38 -2.2
5,183,222 - PFLU_RS23065 0.38 -0.8
5,183,222 - PFLU_RS23065 0.38 +1.2
5,183,222 - PFLU_RS23065 0.38 -0.4
5,183,428 + PFLU_RS23065 0.59 -2.6
5,183,428 + PFLU_RS23065 0.59 -0.4
5,183,497 + PFLU_RS23065 0.65 -1.9
5,183,497 + PFLU_RS23065 0.65 -0.4
5,183,497 + PFLU_RS23065 0.65 +1.2
5,183,498 - PFLU_RS23065 0.65 -2.2
5,183,498 - PFLU_RS23065 0.65 -0.4
5,183,498 - PFLU_RS23065 0.65 -1.5
5,183,498 - PFLU_RS23065 0.65 -2.9
5,183,529 - PFLU_RS23065 0.69 -0.6
5,183,660 + PFLU_RS23065 0.82 -0.4
5,183,660 + PFLU_RS23065 0.82 -1.1
5,183,715 + PFLU_RS23065 0.87 -1.6
5,183,715 + PFLU_RS23065 0.87 -1.4
5,183,715 + PFLU_RS23065 0.87 -1.6
5,183,715 + PFLU_RS23065 0.87 -0.1
5,183,715 + PFLU_RS23065 0.87 -1.1
5,183,715 + PFLU_RS23065 0.87 -0.5
5,183,715 + PFLU_RS23065 0.87 +0.6
5,183,715 + PFLU_RS23065 0.87 +0.1
5,183,715 + PFLU_RS23065 0.87 -0.8
5,183,715 + PFLU_RS23065 0.87 +0.4
5,183,715 + PFLU_RS23065 0.87 -0.8
5,183,715 + PFLU_RS23065 0.87 -0.8
5,183,716 - PFLU_RS23065 0.87 -0.4
5,183,716 - PFLU_RS23065 0.87 -1.8
5,183,716 - PFLU_RS23065 0.87 -0.8
5,183,716 - PFLU_RS23065 0.87 +0.2
5,183,716 - PFLU_RS23065 0.87 -0.9
5,183,716 - PFLU_RS23065 0.87 +0.2
5,183,716 - PFLU_RS23065 0.87 -0.8
5,183,716 - PFLU_RS23065 0.87 -2.1
5,183,716 - PFLU_RS23065 0.87 +0.2
5,183,824 - -1.1
5,183,836 - +0.4
5,183,836 - +1.8
5,183,836 - -0.4
5,183,881 - PFLU_RS23070 0.16 -0.0
5,183,881 - PFLU_RS23070 0.16 +0.2
5,184,069 - -0.8
5,184,069 - +2.8
5,184,081 - -1.9
5,184,081 - -1.4
5,184,081 - +0.9
5,184,105 - PFLU_RS23075 0.11 +0.6
5,184,578 - -0.8
5,184,578 - +0.6
5,184,693 + +0.7
5,184,693 + +0.3
5,184,693 + -0.4
5,184,693 + -0.3
5,184,693 + -0.4
5,184,694 - -1.6
5,184,694 - -0.8
5,184,694 - +0.7
5,184,694 - -0.5
5,184,694 - +0.6
5,184,694 - -0.4
5,184,694 - -0.4
5,184,694 - -0.4
5,184,694 - +0.2
5,184,694 - -0.6
5,184,696 + -0.4
5,184,696 + -0.1
5,184,696 + +0.9
5,184,697 - +0.2
5,184,697 - -1.1
5,184,716 + +1.5
5,184,791 - PFLU_RS23080 0.19 +0.6
5,184,791 - PFLU_RS23080 0.19 +1.3

Or see this region's nucleotide sequence