Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29020

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
6,451,408	+				-1.8
6,451,408	+				+0.2
6,451,408	+				-1.0
6,451,408	+				-1.4
6,451,408	+				-0.7
6,451,408	+				+1.7
6,451,408	+				+0.1
6,451,409	-				-0.2
6,451,409	-				-0.0
6,451,409	-				-1.0
6,451,409	-				-0.3
6,451,409	-				-1.2
6,451,409	-				+0.7
6,451,409	-				-0.8
6,451,409	-				+0.1
6,451,409	-				+1.2
6,451,465	+				-1.2
6,451,465	+				-0.2
6,451,466	-				+0.6
6,451,466	-				+0.2
6,451,524	+				+0.8
6,451,525	-				+1.3
6,451,535	+				+0.0
6,451,536	-				-0.5
6,451,536	-				+0.7
6,451,550	+				-1.1
6,451,554	+				-0.1
6,451,595	+				-2.6
6,451,596	-				-0.7
6,451,596	-				+0.9
6,451,641	-				+0.8
6,451,686	+				+0.0
6,451,686	+				-0.6
6,451,686	+				+0.0
6,451,686	+				+0.4
6,451,686	+				+0.2
6,451,687	-				+1.1
6,451,687	-				+0.7
6,451,687	-				-0.3
6,451,709	+				+1.0
6,451,710	-				-0.7
6,451,843	+		PFLU_RS29015	0.20	+0.8
6,451,843	+		PFLU_RS29015	0.20	+0.6
6,451,843	+		PFLU_RS29015	0.20	+2.8
6,451,844	-		PFLU_RS29015	0.21	-0.2
6,451,861	+		PFLU_RS29015	0.24	+0.3
6,451,862	-		PFLU_RS29015	0.24	-0.7
6,451,862	-		PFLU_RS29015	0.24	-1.4
6,451,949	-		PFLU_RS29015	0.42	-0.0
6,451,990	+		PFLU_RS29015	0.51	+0.2
6,451,990	+		PFLU_RS29015	0.51	+1.5
6,451,990	+		PFLU_RS29015	0.51	+1.3
6,451,990	+		PFLU_RS29015	0.51	+0.1
6,451,991	-		PFLU_RS29015	0.51	+0.1
6,451,991	-		PFLU_RS29015	0.51	+0.2
6,451,991	-		PFLU_RS29015	0.51	-0.4
6,451,993	+		PFLU_RS29015	0.52	+0.2
6,451,993	+		PFLU_RS29015	0.52	-3.4
6,451,993	+		PFLU_RS29015	0.52	-1.7
6,451,993	+		PFLU_RS29015	0.52	-0.5
6,451,993	+		PFLU_RS29015	0.52	-1.3
6,451,993	+		PFLU_RS29015	0.52	+0.4
6,451,993	+		PFLU_RS29015	0.52	-0.3
6,451,994	-		PFLU_RS29015	0.52	-0.3
6,451,994	-		PFLU_RS29015	0.52	+0.9
6,451,994	-		PFLU_RS29015	0.52	-0.4
6,451,994	-		PFLU_RS29015	0.52	-0.9
6,451,994	-		PFLU_RS29015	0.52	-0.2
6,451,994	-		PFLU_RS29015	0.52	-0.5
6,451,999	+		PFLU_RS29015	0.53	+0.5
6,451,999	+		PFLU_RS29015	0.53	+0.6
6,451,999	+		PFLU_RS29015	0.53	+0.8
6,451,999	+		PFLU_RS29015	0.53	+1.3
6,452,000	-		PFLU_RS29015	0.53	+0.1
6,452,000	-		PFLU_RS29015	0.53	+0.2
6,452,014	+		PFLU_RS29015	0.56	-1.4
6,452,038	+		PFLU_RS29015	0.61	-1.7
6,452,038	+		PFLU_RS29015	0.61	-0.1
6,452,038	+		PFLU_RS29015	0.61	+0.7
6,452,038	+		PFLU_RS29015	0.61	+1.7
6,452,038	+		PFLU_RS29015	0.61	+0.6
6,452,038	+		PFLU_RS29015	0.61	-0.2
6,452,038	+		PFLU_RS29015	0.61	-0.4
6,452,038	+		PFLU_RS29015	0.61	-1.9
6,452,039	-		PFLU_RS29015	0.61	+0.8
6,452,039	-		PFLU_RS29015	0.61	+0.7
6,452,039	-		PFLU_RS29015	0.61	+1.0
6,452,039	-		PFLU_RS29015	0.61	-0.6
6,452,224	+				+1.0
6,452,224	+				+0.2
6,452,224	+				+0.4
6,452,224	+				+0.2
6,452,224	+				+0.2
6,452,225	-				+1.2
6,452,256	+				+1.0
6,452,256	+				+0.3
6,452,257	-				-0.2
6,452,422	-				-2.0
6,452,490	+				+1.3
6,452,490	+				-0.6
6,452,490	+				-1.2
6,452,491	-				-0.9
6,452,491	-				-0.6
6,452,491	-				-1.9
6,452,491	-				-1.6
6,452,518	-		PFLU_RS29020	0.12	-1.9
6,452,518	-		PFLU_RS29020	0.12	+0.8
6,452,660	+		PFLU_RS29020	0.26	+0.3
6,452,660	+		PFLU_RS29020	0.26	-0.9
6,452,660	+		PFLU_RS29020	0.26	-0.7
6,452,660	+		PFLU_RS29020	0.26	+0.2
6,452,660	+		PFLU_RS29020	0.26	+0.4
6,452,660	+		PFLU_RS29020	0.26	-1.3
6,452,661	-		PFLU_RS29020	0.26	-2.0
6,452,661	-		PFLU_RS29020	0.26	+1.7
6,452,661	-		PFLU_RS29020	0.26	-1.7
6,452,661	-		PFLU_RS29020	0.26	-1.5
6,452,661	-		PFLU_RS29020	0.26	-1.7
6,452,661	-		PFLU_RS29020	0.26	-1.9
6,452,661	-		PFLU_RS29020	0.26	-2.0
6,452,661	-		PFLU_RS29020	0.26	-2.8
6,452,661	-		PFLU_RS29020	0.26	-0.4
6,452,668	-		PFLU_RS29020	0.27	-2.3
6,452,697	+		PFLU_RS29020	0.30	+0.1
6,452,697	+		PFLU_RS29020	0.30	-2.2
6,452,749	+		PFLU_RS29020	0.36	-2.5
6,452,749	+		PFLU_RS29020	0.36	-1.4
6,452,749	+		PFLU_RS29020	0.36	-2.3
6,452,750	-		PFLU_RS29020	0.36	-1.9
6,452,750	-		PFLU_RS29020	0.36	-1.9
6,452,750	-		PFLU_RS29020	0.36	-1.0
6,452,750	-		PFLU_RS29020	0.36	-1.6
6,452,750	-		PFLU_RS29020	0.36	-0.4
6,452,882	-		PFLU_RS29020	0.49	-0.0
6,452,882	-		PFLU_RS29020	0.49	+0.2
6,452,994	+		PFLU_RS29020	0.61	+0.7
6,452,994	+		PFLU_RS29020	0.61	-1.4
6,452,994	+		PFLU_RS29020	0.61	-2.2
6,452,994	+		PFLU_RS29020	0.61	+1.8
6,452,994	+		PFLU_RS29020	0.61	-0.6
6,452,994	+		PFLU_RS29020	0.61	-1.4
6,452,994	+		PFLU_RS29020	0.61	-0.5
6,452,995	-		PFLU_RS29020	0.61	-0.3
6,452,995	-		PFLU_RS29020	0.61	-1.5
6,452,995	-		PFLU_RS29020	0.61	-1.2
6,452,995	-		PFLU_RS29020	0.61	-0.2
6,452,995	-		PFLU_RS29020	0.61	-1.6
6,452,995	-		PFLU_RS29020	0.61	+0.1
6,452,995	-		PFLU_RS29020	0.61	-0.2
6,453,071	+		PFLU_RS29020	0.69	-1.2
6,453,071	+		PFLU_RS29020	0.69	-0.8
6,453,071	+		PFLU_RS29020	0.69	-1.0
6,453,071	+		PFLU_RS29020	0.69	-1.1
6,453,071	+		PFLU_RS29020	0.69	-2.0
6,453,072	-		PFLU_RS29020	0.69	-1.4
6,453,072	-		PFLU_RS29020	0.69	-0.5
6,453,072	-		PFLU_RS29020	0.69	-1.0
6,453,072	-		PFLU_RS29020	0.69	-2.2
6,453,072	-		PFLU_RS29020	0.69	+0.4
6,453,072	-		PFLU_RS29020	0.69	-1.6
6,453,072	-		PFLU_RS29020	0.69	+1.1
6,453,180	+		PFLU_RS29020	0.80	-1.7
6,453,180	+		PFLU_RS29020	0.80	+0.7
6,453,180	+		PFLU_RS29020	0.80	-1.5
6,453,180	+		PFLU_RS29020	0.80	-1.2
6,453,180	+		PFLU_RS29020	0.80	+0.4
6,453,181	-		PFLU_RS29020	0.80	-0.6
6,453,181	-		PFLU_RS29020	0.80	+0.4
6,453,181	-		PFLU_RS29020	0.80	-0.6
6,453,181	-		PFLU_RS29020	0.80	-1.0
6,453,365	+				+1.0
6,453,365	+				-1.5
6,453,366	-				+0.2
6,453,379	+				-2.0
6,453,380	-				-1.5
6,453,380	-				+0.6
6,453,380	-				-2.2