Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27880

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
6,205,569	-		PFLU_RS27875	0.32	+1.4
6,205,692	+		PFLU_RS27875	0.42	-2.1
6,205,693	-		PFLU_RS27875	0.42	-1.0
6,205,693	-		PFLU_RS27875	0.42	-3.8
6,205,693	-		PFLU_RS27875	0.42	-2.7
6,205,693	-		PFLU_RS27875	0.42	-2.1
6,205,693	-		PFLU_RS27875	0.42	-2.4
6,205,934	-		PFLU_RS27875	0.62	-1.8
6,206,019	+		PFLU_RS27875	0.69	-2.3
6,206,128	+		PFLU_RS27875	0.78	-3.2
6,206,128	+		PFLU_RS27875	0.78	-2.9
6,206,128	+		PFLU_RS27875	0.78	-1.6
6,206,128	+		PFLU_RS27875	0.78	-0.4
6,206,128	+		PFLU_RS27875	0.78	-2.8
6,206,128	+		PFLU_RS27875	0.78	-1.6
6,206,128	+		PFLU_RS27875	0.78	-2.6
6,206,128	+		PFLU_RS27875	0.78	-2.6
6,206,128	+		PFLU_RS27875	0.78	-2.1
6,206,128	+		PFLU_RS27875	0.78	-2.0
6,206,128	+		PFLU_RS27875	0.78	-1.0
6,206,129	-		PFLU_RS27875	0.78	-3.1
6,206,129	-		PFLU_RS27875	0.78	-2.1
6,206,129	-		PFLU_RS27875	0.78	-0.6
6,206,129	-		PFLU_RS27875	0.78	-2.9
6,206,129	-		PFLU_RS27875	0.78	-3.2
6,206,129	-		PFLU_RS27875	0.78	-3.2
6,206,225	+		PFLU_RS27875	0.86	-1.9
6,206,265	+		PFLU_RS27875	0.89	-2.7
6,206,265	+		PFLU_RS27875	0.89	-4.3
6,206,266	-		PFLU_RS27875	0.89	-1.8
6,206,266	-		PFLU_RS27875	0.89	-3.2
6,206,266	-		PFLU_RS27875	0.89	-0.4
6,206,288	+				-1.3
6,206,310	+				-2.1
6,206,384	+				-1.2
6,206,530	+				-4.2
6,206,530	+				+0.0
6,206,531	-				-3.0
6,206,733	+		PFLU_RS27880	0.17	-2.2
6,206,733	+		PFLU_RS27880	0.17	-2.1
6,206,758	-		PFLU_RS27880	0.18	-1.8
6,206,773	-		PFLU_RS27880	0.19	-2.0
6,206,773	-		PFLU_RS27880	0.19	-2.8
6,206,842	+		PFLU_RS27880	0.23	+1.4
6,206,842	+		PFLU_RS27880	0.23	-1.0
6,206,842	+		PFLU_RS27880	0.23	-1.4
6,206,842	+		PFLU_RS27880	0.23	-3.2
6,206,842	+		PFLU_RS27880	0.23	-3.8
6,206,843	-		PFLU_RS27880	0.23	-1.4
6,206,843	-		PFLU_RS27880	0.23	+1.4
6,206,843	-		PFLU_RS27880	0.23	-2.3
6,206,862	+		PFLU_RS27880	0.24	-1.0
6,206,862	+		PFLU_RS27880	0.24	-2.2
6,206,862	+		PFLU_RS27880	0.24	-2.9
6,206,862	+		PFLU_RS27880	0.24	-3.0
6,206,862	+		PFLU_RS27880	0.24	-2.5
6,206,862	+		PFLU_RS27880	0.24	-2.8
6,206,862	+		PFLU_RS27880	0.24	-1.8
6,206,863	-		PFLU_RS27880	0.24	-1.8
6,206,863	-		PFLU_RS27880	0.24	-0.4
6,206,863	-		PFLU_RS27880	0.24	-1.0
6,206,863	-		PFLU_RS27880	0.24	-2.3
6,206,863	-		PFLU_RS27880	0.24	-3.6
6,206,884	-		PFLU_RS27880	0.25	-3.2
6,206,943	+		PFLU_RS27880	0.28	-2.2
6,206,943	+		PFLU_RS27880	0.28	-1.2
6,206,943	+		PFLU_RS27880	0.28	-1.5
6,206,943	+		PFLU_RS27880	0.28	-2.2
6,206,943	+		PFLU_RS27880	0.28	-2.7
6,206,944	-		PFLU_RS27880	0.28	-1.4
6,206,944	-		PFLU_RS27880	0.28	-2.8
6,207,014	+		PFLU_RS27880	0.32	-1.4
6,207,014	+		PFLU_RS27880	0.32	-0.4
6,207,015	-		PFLU_RS27880	0.32	-2.3
6,207,015	-		PFLU_RS27880	0.32	-0.2
6,207,015	-		PFLU_RS27880	0.32	-2.3
6,207,109	+		PFLU_RS27880	0.36	-2.9
6,207,476	-		PFLU_RS27880	0.55	-2.4
6,207,476	-		PFLU_RS27880	0.55	-3.9
6,208,017	+		PFLU_RS27880	0.83	-3.0
6,208,068	+		PFLU_RS27880	0.85	-1.0
6,208,103	+		PFLU_RS27880	0.87	-1.4
6,208,170	+				-2.3
6,208,170	+				-2.3
6,208,170	+				-3.3
6,208,170	+				-2.1
6,208,170	+				-1.8
6,208,170	+				-2.1
6,208,170	+				-1.8
6,208,170	+				-3.0
6,208,170	+				-2.2
6,208,170	+				-2.2
6,208,170	+				-2.5
6,208,170	+				-2.4
6,208,170	+				-2.7
6,208,171	-				-0.9
6,208,171	-				-3.0
6,208,171	-				-0.6
6,208,171	-				-0.6
6,208,171	-				-4.0
6,208,171	-				-2.3
6,208,171	-				-1.4
6,208,171	-				-2.9
6,208,171	-				-0.6
6,208,209	+				-2.4
6,208,209	+				-3.2
6,208,209	+				-3.6
6,208,209	+				-0.6
6,208,209	+				-3.0
6,208,210	-				-1.6
6,208,333	+				-3.3
6,208,334	-				-2.1
6,208,383	+				-2.7
6,208,384	-				-0.8
6,208,400	+				-1.0
6,208,400	+				-2.0
6,208,400	+				-3.3
6,208,400	+				-2.4
6,208,401	-				-0.2
6,208,401	-				+0.2
6,208,401	-				-1.1
6,208,511	+				-2.2
6,208,511	+				-1.8
6,208,511	+				-2.0
6,208,512	-				-0.2
6,208,512	-				-0.1
6,208,512	-				-0.2
6,208,512	-				+0.8
6,208,512	-				+0.0
6,208,557	+				-1.4
6,208,557	+				-3.5
6,208,557	+				-2.6
6,208,557	+				-0.2
6,208,557	+				-3.4
6,208,557	+				-2.1
6,208,558	-				-1.8
6,208,558	-				-2.4
6,208,558	-				-2.7
6,208,576	+				-3.7
6,208,576	+				-2.8
6,208,576	+				-3.2
6,208,576	+				-0.1
6,208,577	-				-2.7
6,208,577	-				-2.3
6,208,577	-				-3.5
6,208,577	-				-1.4
6,208,577	-				-3.0
6,208,614	+				-3.1
6,208,614	+				-2.7
6,208,614	+				-3.7
6,208,615	-				-3.0
6,208,713	+				-3.7
6,208,713	+				-1.6
6,208,713	+				-3.6
6,208,713	+				-3.4
6,208,713	+				-3.0
6,208,713	+				-3.0
6,208,713	+				-1.6
6,208,713	+				-2.8
6,208,714	-				-3.4
6,208,714	-				-4.0
6,208,714	-				-2.3
6,208,714	-				-3.1
6,208,714	-				-2.9
6,208,714	-				-3.2
6,208,716	+				-2.6
6,208,716	+				-3.1
6,208,716	+				-2.7
6,208,716	+				-2.7
6,208,716	+				+0.4
6,208,716	+				-1.2
6,208,716	+				+0.4
6,208,716	+				-3.0
6,208,717	-				-0.4
6,208,717	-				-1.4
6,208,717	-				-2.2
6,208,717	-				-3.0
6,208,717	-				-2.2
6,208,717	-				-1.6
6,208,791	+		PFLU_RS27885	0.13	-1.4
6,208,791	+		PFLU_RS27885	0.13	-1.8
6,208,791	+		PFLU_RS27885	0.13	-0.2
6,208,791	+		PFLU_RS27885	0.13	-1.0
6,208,792	-		PFLU_RS27885	0.13	-4.3
6,208,792	-		PFLU_RS27885	0.13	-1.4
6,208,792	-		PFLU_RS27885	0.13	-0.2
6,208,792	-		PFLU_RS27885	0.13	+0.4
6,208,833	+		PFLU_RS27885	0.15	-2.4
6,208,881	+		PFLU_RS27885	0.17	-0.1
6,208,882	-		PFLU_RS27885	0.17	-2.6
6,208,882	-		PFLU_RS27885	0.17	-2.3
6,208,882	-		PFLU_RS27885	0.17	-2.7
6,208,882	-		PFLU_RS27885	0.17	-1.1
6,208,894	-		PFLU_RS27885	0.18	-3.7
6,208,894	-		PFLU_RS27885	0.18	-1.2
6,208,896	+		PFLU_RS27885	0.18	-3.0
6,208,896	+		PFLU_RS27885	0.18	-2.2
6,208,896	+		PFLU_RS27885	0.18	+1.4
6,208,896	+		PFLU_RS27885	0.18	-4.1
6,208,896	+		PFLU_RS27885	0.18	-3.0
6,208,896	+		PFLU_RS27885	0.18	-1.2
6,208,896	+		PFLU_RS27885	0.18	-2.4
6,208,896	+		PFLU_RS27885	0.18	-1.7
6,208,896	+		PFLU_RS27885	0.18	-1.8
6,208,897	-		PFLU_RS27885	0.18	-3.5
6,208,897	-		PFLU_RS27885	0.18	-3.7
6,208,897	-		PFLU_RS27885	0.18	-2.0
6,208,913	-		PFLU_RS27885	0.19	-2.5
6,209,025	+		PFLU_RS27885	0.24	-1.0
6,209,025	+		PFLU_RS27885	0.24	-0.2
6,209,025	+		PFLU_RS27885	0.24	-1.4
6,209,026	-		PFLU_RS27885	0.24	-2.1
6,209,026	-		PFLU_RS27885	0.24	-2.1
6,209,026	-		PFLU_RS27885	0.24	-1.2