Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27810

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
6,187,129	+		PFLU_RS27800	0.88	+0.0
6,187,129	+		PFLU_RS27800	0.88	-0.4
6,187,129	+		PFLU_RS27800	0.88	+0.4
6,187,129	+		PFLU_RS27800	0.88	-2.1
6,187,129	+		PFLU_RS27800	0.88	-1.0
6,187,129	+		PFLU_RS27800	0.88	-0.6
6,187,129	+		PFLU_RS27800	0.88	-1.3
6,187,130	-		PFLU_RS27800	0.88	-1.2
6,187,130	-		PFLU_RS27800	0.88	+0.4
6,187,130	-		PFLU_RS27800	0.88	-0.7
6,187,130	-		PFLU_RS27800	0.88	+0.9
6,187,130	-		PFLU_RS27800	0.88	-0.9
6,187,130	-		PFLU_RS27800	0.88	+0.5
6,187,150	+				-0.4
6,187,151	-				+0.0
6,187,211	+				-0.5
6,187,211	+				+0.6
6,187,212	-				+0.9
6,187,212	-				-1.4
6,187,212	-				+0.7
6,187,298	+				-2.0
6,187,298	+				-3.3
6,187,298	+				-2.3
6,187,427	+		PFLU_RS27805	0.30	-1.8
6,187,427	+		PFLU_RS27805	0.30	+0.4
6,187,427	+		PFLU_RS27805	0.30	-3.3
6,187,428	-		PFLU_RS27805	0.30	-3.3
6,187,428	-		PFLU_RS27805	0.30	-1.2
6,187,678	+		PFLU_RS27805	0.69	-2.0
6,187,678	+		PFLU_RS27805	0.69	-2.0
6,187,853	+				-1.6
6,187,853	+				-0.6
6,187,853	+				-2.6
6,187,854	-				-2.7
6,187,855	+				-2.3
6,187,855	+				-2.0
6,187,855	+				-3.9
6,187,855	+				-1.2
6,187,855	+				-2.9
6,187,855	+				-1.6
6,187,855	+				-0.2
6,187,855	+				-3.4
6,187,855	+				-1.0
6,187,855	+				-2.7
6,187,856	-				-3.3
6,187,856	-				-2.4
6,187,856	-				-1.0
6,187,856	-				-2.2
6,187,856	-				-3.1
6,187,856	-				-1.0
6,187,856	-				+0.4
6,187,856	-				-3.3
6,187,856	-				-1.2
6,187,872	+				-2.3
6,187,873	-				-0.2
6,187,873	-				-2.0
6,187,873	-				-3.5
6,187,873	-				-3.5
6,187,873	-				-0.6
6,187,893	+				-2.7
6,187,893	+				-3.0
6,187,893	+				-3.2
6,187,893	+				-2.5
6,187,893	+				-2.7
6,187,893	+				-1.4
6,187,893	+				-2.1
6,187,894	-				-0.2
6,187,894	-				-0.7
6,187,995	+				-1.8
6,188,143	-				-1.4
6,188,163	+				+0.4
6,188,163	+				-1.1
6,188,163	+				-0.2
6,188,163	+				-0.4
6,188,163	+				-3.1
6,188,164	-				-2.3
6,188,164	-				-3.2
6,188,164	-				-2.1
6,188,164	-				-0.4
6,188,164	-				-2.4
6,188,164	-				-1.2
6,188,164	-				-2.2
6,188,164	-				-1.0
6,188,284	+				-2.4
6,188,284	+				-1.4
6,188,284	+				-1.0
6,188,285	-				-1.8
6,188,285	-				-0.6
6,188,285	-				-1.6
6,188,481	+		PFLU_RS27810	0.16	-3.0
6,188,482	-		PFLU_RS27810	0.16	-2.4
6,188,526	+		PFLU_RS27810	0.18	-2.0
6,188,526	+		PFLU_RS27810	0.18	-3.1
6,188,526	+		PFLU_RS27810	0.18	-0.6
6,188,550	+		PFLU_RS27810	0.18	-2.0
6,188,550	+		PFLU_RS27810	0.18	-1.4
6,188,739	+		PFLU_RS27810	0.25	-0.6
6,188,739	+		PFLU_RS27810	0.25	-2.1
6,188,740	-		PFLU_RS27810	0.25	-3.1
6,188,740	-		PFLU_RS27810	0.25	-3.3
6,188,740	-		PFLU_RS27810	0.25	-3.4
6,188,740	-		PFLU_RS27810	0.25	-1.0
6,188,772	+		PFLU_RS27810	0.26	-3.0
6,188,772	+		PFLU_RS27810	0.26	-2.5
6,188,773	-		PFLU_RS27810	0.26	-2.2
6,188,773	-		PFLU_RS27810	0.26	-1.4
6,188,773	-		PFLU_RS27810	0.26	-0.6
6,188,816	-		PFLU_RS27810	0.27	-1.5
6,188,816	-		PFLU_RS27810	0.27	-2.7
6,188,816	-		PFLU_RS27810	0.27	+0.1
6,188,943	+		PFLU_RS27810	0.31	-1.0
6,188,943	+		PFLU_RS27810	0.31	-1.7
6,188,943	+		PFLU_RS27810	0.31	-3.3
6,188,944	-		PFLU_RS27810	0.31	-3.3
6,188,944	-		PFLU_RS27810	0.31	+0.4
6,188,944	-		PFLU_RS27810	0.31	-2.4
6,188,944	-		PFLU_RS27810	0.31	+0.4
6,188,944	-		PFLU_RS27810	0.31	-2.1
6,189,090	+		PFLU_RS27810	0.36	-2.8
6,189,090	+		PFLU_RS27810	0.36	-1.0
6,189,090	+		PFLU_RS27810	0.36	-0.2
6,189,090	+		PFLU_RS27810	0.36	-2.2
6,189,091	-		PFLU_RS27810	0.36	-3.2
6,189,091	-		PFLU_RS27810	0.36	-2.8
6,189,091	-		PFLU_RS27810	0.36	-1.8
6,189,091	-		PFLU_RS27810	0.36	-2.4
6,189,166	-		PFLU_RS27810	0.39	-3.0
6,189,231	+		PFLU_RS27810	0.41	-2.0
6,189,231	+		PFLU_RS27810	0.41	-3.7
6,189,231	+		PFLU_RS27810	0.41	-3.9
6,189,231	+		PFLU_RS27810	0.41	-1.0
6,189,231	+		PFLU_RS27810	0.41	-3.0
6,189,231	+		PFLU_RS27810	0.41	-2.2
6,189,231	+		PFLU_RS27810	0.41	-2.8
6,189,232	-		PFLU_RS27810	0.41	-1.6
6,189,232	-		PFLU_RS27810	0.41	-1.8
6,189,232	-		PFLU_RS27810	0.41	-4.0
6,189,232	-		PFLU_RS27810	0.41	-2.6
6,189,232	-		PFLU_RS27810	0.41	-1.4
6,189,232	-		PFLU_RS27810	0.41	-2.1
6,189,232	-		PFLU_RS27810	0.41	-2.3
6,189,232	-		PFLU_RS27810	0.41	-2.0
6,189,486	+		PFLU_RS27810	0.49	-2.6
6,189,486	+		PFLU_RS27810	0.49	-2.0
6,189,486	+		PFLU_RS27810	0.49	-1.1
6,189,487	-		PFLU_RS27810	0.49	-2.2
6,189,487	-		PFLU_RS27810	0.49	-1.9
6,189,616	+		PFLU_RS27810	0.54	-2.6
6,189,616	+		PFLU_RS27810	0.54	-3.0
6,189,616	+		PFLU_RS27810	0.54	-1.2
6,189,617	-		PFLU_RS27810	0.54	-4.6
6,189,618	+		PFLU_RS27810	0.54	-1.6
6,189,618	+		PFLU_RS27810	0.54	-2.1
6,189,618	+		PFLU_RS27810	0.54	-2.3
6,189,619	-		PFLU_RS27810	0.54	-3.2
6,189,619	-		PFLU_RS27810	0.54	-1.6
6,189,619	-		PFLU_RS27810	0.54	-2.6
6,189,619	-		PFLU_RS27810	0.54	-3.4
6,189,619	-		PFLU_RS27810	0.54	-2.4
6,189,619	-		PFLU_RS27810	0.54	-1.6
6,189,619	-		PFLU_RS27810	0.54	-2.4
6,189,619	-		PFLU_RS27810	0.54	-1.4
6,189,744	+		PFLU_RS27810	0.58	-3.3
6,189,745	-		PFLU_RS27810	0.58	-3.2
6,189,802	+		PFLU_RS27810	0.60	-1.4
6,189,803	-		PFLU_RS27810	0.60	-2.7
6,189,803	-		PFLU_RS27810	0.60	-2.9
6,189,803	-		PFLU_RS27810	0.60	-2.3
6,189,803	-		PFLU_RS27810	0.60	-3.0
6,189,889	+		PFLU_RS27810	0.63	-3.8
6,190,049	+		PFLU_RS27810	0.68	-1.6
6,190,049	+		PFLU_RS27810	0.68	-3.2
6,190,049	+		PFLU_RS27810	0.68	-2.9
6,190,049	+		PFLU_RS27810	0.68	-1.0
6,190,050	-		PFLU_RS27810	0.68	-2.2
6,190,050	-		PFLU_RS27810	0.68	-3.4
6,190,068	+		PFLU_RS27810	0.69	-1.0
6,190,068	+		PFLU_RS27810	0.69	-3.3
6,190,068	+		PFLU_RS27810	0.69	-3.0
6,190,068	+		PFLU_RS27810	0.69	-2.8
6,190,068	+		PFLU_RS27810	0.69	-2.4
6,190,068	+		PFLU_RS27810	0.69	-3.0
6,190,068	+		PFLU_RS27810	0.69	-1.0
6,190,069	-		PFLU_RS27810	0.69	-1.0
6,190,069	-		PFLU_RS27810	0.69	-2.7
6,190,069	-		PFLU_RS27810	0.69	+1.4
6,190,069	-		PFLU_RS27810	0.69	-2.7
6,190,069	-		PFLU_RS27810	0.69	-1.6
6,190,119	+		PFLU_RS27810	0.70	-1.6
6,190,119	+		PFLU_RS27810	0.70	-0.6
6,190,120	-		PFLU_RS27810	0.70	-3.2
6,190,184	-		PFLU_RS27810	0.72	-2.0
6,190,524	+		PFLU_RS27810	0.84	-1.6
6,190,524	+		PFLU_RS27810	0.84	-1.0
6,190,524	+		PFLU_RS27810	0.84	-2.8
6,190,524	+		PFLU_RS27810	0.84	-1.4
6,190,524	+		PFLU_RS27810	0.84	-3.4
6,190,525	-		PFLU_RS27810	0.84	-2.8
6,190,525	-		PFLU_RS27810	0.84	-3.6
6,190,525	-		PFLU_RS27810	0.84	-2.7
6,190,525	-		PFLU_RS27810	0.84	-2.7
6,190,581	+		PFLU_RS27810	0.86	+1.4
6,190,581	+		PFLU_RS27810	0.86	-2.4
6,190,581	+		PFLU_RS27810	0.86	-2.3
6,190,581	+		PFLU_RS27810	0.86	-2.5
6,190,581	+		PFLU_RS27810	0.86	-3.6
6,190,581	+		PFLU_RS27810	0.86	-2.3
6,190,581	+		PFLU_RS27810	0.86	-1.0
6,190,581	+		PFLU_RS27810	0.86	-2.0
6,190,582	-		PFLU_RS27810	0.86	-3.3
6,190,582	-		PFLU_RS27810	0.86	-2.5
6,190,582	-		PFLU_RS27810	0.86	-2.1
6,190,582	-		PFLU_RS27810	0.86	-3.3
6,190,582	-		PFLU_RS27810	0.86	-2.0
6,190,582	-		PFLU_RS27810	0.86	-3.3
6,190,582	-		PFLU_RS27810	0.86	-3.2
6,190,582	-		PFLU_RS27810	0.86	-2.6
6,190,582	-		PFLU_RS27810	0.86	-3.1
6,190,582	-		PFLU_RS27810	0.86	-2.6
6,190,582	-		PFLU_RS27810	0.86	-2.2
6,190,590	+		PFLU_RS27810	0.86	-2.1
6,190,591	-		PFLU_RS27810	0.86	-1.0
6,190,614	+		PFLU_RS27810	0.87	-1.4
6,190,614	+		PFLU_RS27810	0.87	-1.8
6,190,614	+		PFLU_RS27810	0.87	-0.2
6,190,614	+		PFLU_RS27810	0.87	-3.1
6,190,615	-		PFLU_RS27810	0.87	-1.1
6,190,615	-		PFLU_RS27810	0.87	-2.5
6,190,629	+		PFLU_RS27810	0.87	-1.4
6,190,629	+		PFLU_RS27810	0.87	-3.4
6,190,629	+		PFLU_RS27810	0.87	-3.5
6,190,629	+		PFLU_RS27810	0.87	-3.4
6,190,629	+		PFLU_RS27810	0.87	-1.0
6,190,629	+		PFLU_RS27810	0.87	-2.0
6,190,630	-		PFLU_RS27810	0.87	-3.1
6,190,630	-		PFLU_RS27810	0.87	-2.8
6,190,630	-		PFLU_RS27810	0.87	-2.3
6,190,630	-		PFLU_RS27810	0.87	-1.2
6,190,630	-		PFLU_RS27810	0.87	-2.9
6,190,632	+		PFLU_RS27810	0.87	-4.3
6,190,633	-		PFLU_RS27810	0.87	-2.8
6,190,633	-		PFLU_RS27810	0.87	-1.6
6,190,737	+				-2.3
6,190,737	+				-2.9
6,190,738	-				-1.2
6,190,854	+				-3.4
6,190,854	+				-4.1
6,190,854	+				-3.0
6,190,854	+				-1.4
6,190,855	-				-1.4
6,190,855	-				-1.8
6,190,932	+				-2.8
6,190,932	+				-0.2
6,190,932	+				-0.7
6,190,932	+				-3.6
6,190,932	+				-1.3
6,190,932	+				-2.7
6,190,932	+				-1.8
6,190,932	+				-2.3
6,190,932	+				-1.6
6,190,932	+				-3.1
6,190,933	-				-1.2
6,190,933	-				-3.7
6,190,933	-				-3.3
6,190,951	+				-1.4
6,190,951	+				-3.5
6,190,952	-				-1.0
6,190,966	+				+1.4
6,190,966	+				-1.8
6,190,966	+				-1.8
6,190,967	-				-2.8
6,190,967	-				-1.2
6,191,014	+				-3.2
6,191,014	+				-2.2
6,191,015	-				-2.0
6,191,015	-				-3.3
6,191,015	-				-2.8
6,191,015	-				-1.6
6,191,015	-				-1.2
6,191,015	-				-2.9
6,191,015	-				-2.5
6,191,066	+		PFLU_RS27815	0.18	-2.1
6,191,066	+		PFLU_RS27815	0.18	+0.8
6,191,067	-		PFLU_RS27815	0.18	-2.1
6,191,067	-		PFLU_RS27815	0.18	-2.4
6,191,067	-		PFLU_RS27815	0.18	-1.2
6,191,067	-		PFLU_RS27815	0.18	-2.5
6,191,067	-		PFLU_RS27815	0.18	-3.8
6,191,084	+		PFLU_RS27815	0.24	-2.2
6,191,085	-		PFLU_RS27815	0.24	-1.7
6,191,114	+		PFLU_RS27815	0.34	-2.9
6,191,115	-		PFLU_RS27815	0.34	-1.2
6,191,115	-		PFLU_RS27815	0.34	-1.9
6,191,186	+		PFLU_RS27815	0.58	-2.5
6,191,186	+		PFLU_RS27815	0.58	-2.6
6,191,186	+		PFLU_RS27815	0.58	-2.1
6,191,187	-		PFLU_RS27815	0.58	-1.6
6,191,187	-		PFLU_RS27815	0.58	-2.3
6,191,187	-		PFLU_RS27815	0.58	-1.0
6,191,187	-		PFLU_RS27815	0.58	-3.3
6,191,187	-		PFLU_RS27815	0.58	-3.0
6,191,187	-		PFLU_RS27815	0.58	-4.3
6,191,187	-		PFLU_RS27815	0.58	-2.8
6,191,187	-		PFLU_RS27815	0.58	-1.6
6,191,187	-		PFLU_RS27815	0.58	-3.0
6,191,187	-		PFLU_RS27815	0.58	-2.1
6,191,187	-		PFLU_RS27815	0.58	-0.6
6,191,187	-		PFLU_RS27815	0.58	-2.2
6,191,187	-		PFLU_RS27815	0.58	-0.6
6,191,304	+				-2.8
6,191,304	+				-0.6
6,191,304	+				-1.4
6,191,304	+				-1.8
6,191,304	+				-1.0
6,191,304	+				-1.6
6,191,304	+				-1.0
6,191,304	+				-2.3
6,191,304	+				-3.3
6,191,305	-				-3.1
6,191,305	-				-0.6
6,191,305	-				-1.4
6,191,305	-				-1.0
6,191,305	-				-2.9
6,191,305	-				-2.1
6,191,314	-				-2.2
6,191,314	-				-2.5
6,191,331	-				-0.0
6,191,331	-				-0.6
6,191,679	-		PFLU_RS27820	0.28	-3.0
6,191,679	-		PFLU_RS27820	0.28	+3.4
6,191,732	+		PFLU_RS27820	0.32	-2.5
6,191,732	+		PFLU_RS27820	0.32	-3.0
6,191,732	+		PFLU_RS27820	0.32	-2.9
6,191,732	+		PFLU_RS27820	0.32	-3.1
6,191,732	+		PFLU_RS27820	0.32	-1.2
6,191,732	+		PFLU_RS27820	0.32	-0.2
6,191,733	-		PFLU_RS27820	0.32	-2.0
6,191,733	-		PFLU_RS27820	0.32	-2.2
6,191,733	-		PFLU_RS27820	0.32	-2.7
6,191,733	-		PFLU_RS27820	0.32	-3.3
6,191,733	-		PFLU_RS27820	0.32	-1.8
6,191,733	-		PFLU_RS27820	0.32	-0.6
6,191,733	-		PFLU_RS27820	0.32	-2.2
6,191,733	-		PFLU_RS27820	0.32	-3.6
6,191,733	-		PFLU_RS27820	0.32	-2.2
6,191,733	-		PFLU_RS27820	0.32	-2.5
6,191,733	-		PFLU_RS27820	0.32	-1.4
6,191,733	-		PFLU_RS27820	0.32	-3.9